Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25o15
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 37 0.004
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 36 0.008
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 35 0.011
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 33 0.045
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 31 0.18
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 30 0.32
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.73
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 29 0.97
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 29 0.97
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.3
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.3
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 28 1.7
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|... 28 1.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 1.7
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.2
SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr... 27 3.0
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 3.9
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.9
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 27 3.9
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa... 27 3.9
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 26 5.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 5.2
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 26 5.2
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 26 6.8
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 26 6.8
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 25 9.0
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 9.0
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 9.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 9.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 9.0
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 39.1 bits (87), Expect = 7e-04
Identities = 37/177 (20%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Frame = +3
Query: 45 VSEVNDLKTQIISIVPRNIVNRILKENYKVKVENVNAELMENVAVISAVSALVQQYEQSE 224
++ + LK +I S+ + ++ + ++ E V ++++ ++++
Sbjct: 445 ITSNSQLKDEITSLKQTVSESEAERKRLFSSAQEKQLQMKETVNKLTSLQEQNNEFDRQL 504
Query: 225 KQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQQCDEM 404
K+ ++ E +L EL++LL + D + + + + L ER Q+LKQ +
Sbjct: 505 KEQEEDLQNKEEELTELRKLLREQTQDSQKLRLLVEQ-------LELER-QDLKQAGENH 556
Query: 405 SSKYSALKTTKIKEMESIADQA------VKSEMSKLNTQLDELNSLFVKYNRKAQDI 557
S S+ T+IK +ES + + ++++LN+Q+DEL + N+K Q++
Sbjct: 557 YSNLSSDYETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQEL 613
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 36.7 bits (81), Expect = 0.004
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Frame = +3
Query: 3 RSKLSNADVA-NLQSVSEVNDLKTQIISIVPRNIVNRILKENYKVKVENVNAELMENVAV 179
RS L+ +A +++++S + D++ QI S + + K + ++ + ME++
Sbjct: 10 RSTLAGFQIAPDVKTISNIQDIRAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQ 69
Query: 180 ISAVSALVQQYEQSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRD 338
+ S ++ EK+ R+ K I NE+ L Q Q E + + R+
Sbjct: 70 TAESSQHAEEILSREKEKFRIAKLLNITENEIMSLESQLQKMKEQLLQLEERE 122
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 35.5 bits (78), Expect = 0.008
Identities = 41/202 (20%), Positives = 87/202 (43%), Gaps = 3/202 (1%)
Frame = +3
Query: 36 LQSVSEVNDLKTQIISIVPRNIVNRILKENYKVKVENVNAELMENVAVISAVSALVQQYE 215
++S +D+ I S V R++ L+ ++ + + M+ + ++ + +
Sbjct: 560 IESPVSKSDVYNAITSAVKRDVFINRLQRLRRMNLYEITFLSMKQKMQLKSLREEIDNTK 619
Query: 216 QSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRN-LNDERFQ--NLK 386
++ +++ R E KLNE + N + ++E + N+ L D R + K
Sbjct: 620 EALDLSVKERSIQEEKLNESLKTSKTNLEEQTQLAEKYHEELLDNQQKLYDLRIELDYTK 679
Query: 387 QQCDEMSSKYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFVKYNRKAQDIFEW 566
C +M + L+ E++ + E SKL QLD++ + F + K +D+
Sbjct: 680 SNCKQMEEEMQVLREGHESEIKDFIE-----EHSKLTKQLDDIKNQFGIISSKNRDLL-- 732
Query: 567 KTSMLKRYETLARTTAASVQPN 632
S L++ ++L + AA N
Sbjct: 733 --SELEKSKSLNNSLAALESKN 752
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 35.1 bits (77), Expect = 0.011
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Frame = +3
Query: 222 EKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNL--KQQC 395
E+Q R+ + K NEL+ L + ++ I +D N +R L K++C
Sbjct: 872 EEQMQRINSEISDKRNELESLEELQH----EVATRIEQDAKINERNAAKRSLLLARKKEC 927
Query: 396 DEMSSKYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFVKYNRKAQDIFEWKTS 575
+E L + S + A+ ++ K+N L + S+ K + + + + S
Sbjct: 928 NEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVNKKAYEQFNNFTKQRDS 987
Query: 576 MLKRYETLART 608
+L R E L R+
Sbjct: 988 LLARREELRRS 998
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 33.1 bits (72), Expect = 0.045
Identities = 31/150 (20%), Positives = 70/150 (46%)
Frame = +3
Query: 84 IVPRNIVNRILKENYKVKVENVNAELMENVAVISAVSALVQQYEQSEKQNIRLRKDFEIK 263
+ +N N +++ + +++ N +L E+ A A +Q+EQ + + R K+
Sbjct: 1446 LTSKNAENEAMQKEIE-SLKDSNHQLQES-ASSDAEQITKEQFEQLKSEKERTEKELADS 1503
Query: 264 LNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIK 443
NEL+ L D + +E + + + +D+ + L QQ +S++ +AL+ +
Sbjct: 1504 KNELEH-LQSEAVDADGKTEISNLEKEIHELRSDK--EGLVQQVQNLSAELAALR--EHS 1558
Query: 444 EMESIADQAVKSEMSKLNTQLDELNSLFVK 533
+ + A E+++L +QL+ + K
Sbjct: 1559 PTQGSLENA--DEIARLRSQLESTKQYYEK 1586
Score = 31.1 bits (67), Expect = 0.18
Identities = 45/220 (20%), Positives = 98/220 (44%), Gaps = 21/220 (9%)
Frame = +3
Query: 15 SNADVANLQSVSEVNDLKTQIISIVPRNIVNRILKENYKVKVENVNAEL----------- 161
S ++ +LQS + D KT+I ++ R KE +V+N++AEL
Sbjct: 1503 SKNELEHLQSEAVDADGKTEISNLEKEIHELRSDKEGLVQQVQNLSAELAALREHSPTQG 1562
Query: 162 -MENVAVISAVSALVQ---QYEQSEKQN--IRLRKDF----EIKLNELQRLLDQNQTDFE 311
+EN I+ + + ++ QY + EK+ + R + E EL+ L++ +
Sbjct: 1563 SLENADEIARLRSQLESTKQYYEKEKETEILAARSELVAEKEKTKEELENQLNEKSQRIK 1622
Query: 312 SISEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIKEMESIADQAVKSEMSK 491
+ E ++ + N +D +KQQ +E + SA K+K++ + + K+++S
Sbjct: 1623 ELEEQAQKNS--SENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSKAKISV 1680
Query: 492 LNTQLDELNSLFVKYNRKAQDIFEWKTSMLKRYETLARTT 611
+ +L + + +++ + ++ K E+ + T
Sbjct: 1681 YEKKTRDLQNKITQLEETIENLNKQLSNPEKTDESTSSVT 1720
Score = 29.1 bits (62), Expect = 0.73
Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 2/143 (1%)
Frame = +3
Query: 132 VKVENVNAELMENVAVISAVSALVQQYEQSEKQNIRLRKDFEIKLNELQRLLDQNQTDFE 311
V N+ +N ++SAV L + E+ EK ++ + E L + +DQ E
Sbjct: 558 VVFRNIRELQQQNQNLLSAVHELADRMEKDEKPDLDGAEIQEETLIKANETIDQLTKMLE 617
Query: 312 SISEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIKE--MESIADQAVKSEM 485
+S+ + R R+ F++L Q+ +++ A +K+ +E + Q +
Sbjct: 618 EVSDQL-RYSLKERDF----FRSLVQENEKLLDMAPATPNSKLNTNLIEQTSYQRSLIRL 672
Query: 486 SKLNTQLDELNSLFVKYNRKAQD 554
+L +L+ L S+ +K ++
Sbjct: 673 EQLTNELESLKSISRNKEKKFEE 695
Score = 29.1 bits (62), Expect = 0.73
Identities = 29/158 (18%), Positives = 72/158 (45%)
Frame = +3
Query: 51 EVNDLKTQIISIVPRNIVNRILKENYKVKVENVNAELMENVAVISAVSALVQQYEQSEKQ 230
++ L+++++ + R +LKE + + + +L + V + + + YE+
Sbjct: 1004 KITSLRSELLDLNKRV---EVLKEEKESSSKELAKQLEDAVREKDSALSFKKDYEKIRSD 1060
Query: 231 NIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQQCDEMSS 410
R+ + + + + L+ + +++ES E +S ++ ++L+ + DE+++
Sbjct: 1061 ADRVITSLKEDIEKERSLMKECHSNYES--EIVSH------GRTTQKLRDLRTEFDEVNT 1112
Query: 411 KYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSL 524
KY LK ++ S A K + DE++SL
Sbjct: 1113 KYLKLK-ANFEQQHSGLSGAEKDWNIQRKAMEDEISSL 1149
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 31.1 bits (67), Expect = 0.18
Identities = 39/176 (22%), Positives = 76/176 (43%), Gaps = 23/176 (13%)
Frame = +3
Query: 108 RILKENYKVKVENVNAELMENVAVISAVSAL----------VQQYEQSEKQNIRLRKDFE 257
RI E +++ E N EL+E + + L + + E+ EK+ IRL ++ +
Sbjct: 100 RIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQK 159
Query: 258 IKLNELQRLLDQNQTDF---------ESISEFISRDPAFNRNLNDERFQNLKQQCDEMSS 410
K NE QR L Q Q D + + E DP + N+ +K + S
Sbjct: 160 HKENE-QRRLKQEQIDAKRKEEEAREKRMKETFKDDPEEDSNMAWSIIHKIKTEVVAPIS 218
Query: 411 KYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFVKYNRKAQD----IFEW 566
+ LK + I + +++K N+Q+ ++ L + ++A++ +++W
Sbjct: 219 EKKELKNYCFTQKRKITPRL--GQITKSNSQIMKITQLLQQTFQEARNTDPLVYKW 272
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 30.3 bits (65), Expect = 0.32
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +3
Query: 285 LDQNQTDFESISEFISRDPAFNRNLNDERFQN----LKQQCDEMS 407
++ NQT+FE + + N +ND R Q+ L QQC++ S
Sbjct: 75 INNNQTEFEQLRDSYKSHGDLNSAINDSRIQSIIFELNQQCEKES 119
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.1 bits (62), Expect = 0.73
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 13/147 (8%)
Frame = +3
Query: 156 ELMENVAVISAVSALVQQYEQS-----EKQNIRLRKDFEIKLNELQRLLDQNQTDFESIS 320
E ENV S ++ ++ E+ E ++ + D EIK N + ++ + E
Sbjct: 89 ETSENVVKNSVDESVAEKPEKEDLAVIESEDKAAKPDGEIKKNVETEVTSRSTSSQEK-- 146
Query: 321 EFISRDPAFNRNLN---DERFQNLKQQCDEMSSKYSALKTTKI-----KEMESIADQAVK 476
+ + + +LN D++ + LK++ ++++ Y LK + + S + A++
Sbjct: 147 DELEKQVKTLHDLNEQKDKKIKELKERINDLTYDYETLKANADDSEGKQTLVSKREAALE 206
Query: 477 SEMSKLNTQLDELNSLFVKYNRKAQDI 557
SKL + +E+N +K N K D+
Sbjct: 207 EFQSKLLIRENEINKRELKMNGKEDDL 233
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 28.7 bits (61), Expect = 0.97
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = +3
Query: 264 LNELQRLLDQNQTDFESISEFISRDPAFNR-----NLNDERF-QNLKQQCDEMSSKYSAL 425
L+E++R + T + + ++P F + N+ + R N E+ KY+
Sbjct: 837 LSEVKRRFPEGITLLDPVENMNIKEPTFIKLMKKVNILESRLLSNPLHNFSELEEKYAEY 896
Query: 426 KTTKIKEMESIADQAVKSEMSKLNTQLDELNS 521
K+ +E + D K ++ QLDELNS
Sbjct: 897 -LRKLALLEEVKDLKKKLSKARSIMQLDELNS 927
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.7 bits (61), Expect = 0.97
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 267 NELQRLLDQNQTDFESISEFISRDPAFNRN--LNDERFQNLKQQCDEMSSKYSALKTTKI 440
NE LL S+ E +R + N + + + NL+ + + MS+ LK
Sbjct: 878 NEYDILLKSEHELDSSLEEMRNRHKSLNEHFIMLSDSMANLQVEHENMSALL--LKEKMY 935
Query: 441 KEMESIADQAVKSEMSKLNTQLDELNS 521
+ +++ ++KSE++ LN+QL + S
Sbjct: 936 LKNQTVEQASLKSEIASLNSQLAKQKS 962
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 1.3
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +3
Query: 219 SEKQNI-RLRKDFEIKLNELQRL-LDQN-QTDFESISEFISRDPAFNR--NLNDERFQNL 383
S K+N+ +L+K ++ L+ LD N Q + + + + ++ +LN + + L
Sbjct: 359 SNKKNLDKLKKMRKLCSRSLEPYELDSNTQRKRKRYEDSLKKSKTLDKVDSLNRKMAKEL 418
Query: 384 KQQCDEMSSKYSALKTTKIKEMESIA----DQAVKSEMSKLNTQLDELNSLFVKYNRKAQ 551
++ + K + +K TK + + I D S S + +QLD N FV + + +
Sbjct: 419 DRKNSKELQKINKVKRTKEECLSEIILLSPDDWASSWYSTVRSQLDSYNCQFVVNSNQPK 478
Query: 552 DIFEWK 569
D WK
Sbjct: 479 DSIMWK 484
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 504 LDELNSLFVKYNRKAQDIFEWKTSMLKRYETLARTTAASVQPNVE 638
++ L + FV K + + EW S + TLAR T AS+ +E
Sbjct: 617 IESLLAFFVPPRTKIEHVSEWGYSAAAKVMTLARQTRASLDYALE 661
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 291 QNQTDFESISEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIKEMESIADQA 470
Q + + + E +S+ + L + NL++Q E + K KI +ME+ Q
Sbjct: 17 QQKRKSKKMEELLSKQREECKELQS-KITNLRKQLKEGNKKQKRALQQKISQMEADLSQK 75
Query: 471 VKSEMSKLNTQLDELN 518
+E KL+ +E N
Sbjct: 76 HATERQKLDKGDEETN 91
>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 684
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 339 PAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIKEMESIADQA 470
PA+ + D+ + +L++Q ++ Y ALK+ +E ++AD A
Sbjct: 315 PAYQPSPIDQFYAHLRRQYYLKTNGYQALKSKAYEEASNVADSA 358
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 360 NDERFQNLKQQCDEMSSKYSALKTTKIKEME 452
ND+ QNLK ++ KYSA + +K K E
Sbjct: 97 NDDFKQNLKSSSNKTEEKYSATQASKSKNDE 127
>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 27.5 bits (58), Expect = 2.2
Identities = 36/174 (20%), Positives = 78/174 (44%), Gaps = 4/174 (2%)
Frame = +3
Query: 9 KLSNADVANLQSVSEVNDLKTQIISIVPRNIVNRILKENYKVK-VENVNAE-LMENVAVI 182
KL +D L+S S+ + K ++ VP+ +I +EN+KVK V++ E L+
Sbjct: 72 KLETSDA--LKSKSKDSSKKEPVV--VPKKGTPKIFQENHKVKKVKSPKKEKLVGKNPAE 127
Query: 183 SAVSALVQQYEQSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLN 362
+ V+ ++ E+++ ++K + + + + S S D F + +
Sbjct: 128 KEDTTDVEDTQKLEQKHSTTPSSLKMKSSISLAAITADDSLHNSFSSN-DIDDGF-QTVT 185
Query: 363 DERFQNLKQQCDEMSSKY--SALKTTKIKEMESIADQAVKSEMSKLNTQLDELN 518
R K+ + ++ + + K + KEM+ +AD+ + ++ +L E N
Sbjct: 186 SSRSYGKKKSTEPLTKRQRQNQQKKLRAKEMQELADEEQRRRLAAHRKELHEAN 239
>SPAC212.03 |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/64 (23%), Positives = 32/64 (50%)
Frame = +3
Query: 207 QYEQSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLK 386
+++ S + N+ + + ++ + + D DF++ S P NRNL + + +K
Sbjct: 4 EFDDSSRHNMNMTQLMQLGAFDRRSGDDFMVQDFKNGIRDCSGIPVNNRNLAFKAYDAVK 63
Query: 387 QQCD 398
Q+CD
Sbjct: 64 QKCD 67
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +3
Query: 240 LRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYS 419
LRK +++L+ + ++ FE +++ + N+E+FQ L + S++S
Sbjct: 270 LRKSLNSYVDKLEVYCQKRKSLFEELNKQYQEQSIIRADPNNEKFQRLANFSKSIESEFS 329
Query: 420 A 422
+
Sbjct: 330 S 330
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.9
Identities = 40/189 (21%), Positives = 82/189 (43%), Gaps = 3/189 (1%)
Frame = +3
Query: 42 SVSEVNDLKTQIISIVPRNIVNR--ILKENYKVKVENVNAELMENVAVISAVSALVQQYE 215
++S VN + ++IVP ++ + + EN+ V EL+ + S+V + + +
Sbjct: 354 TISNVN----RYLNIVPGSLDLQFSLTNENFVHWNSTVYQELLNLKSNNSSVDGVKTRRQ 409
Query: 216 QSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQQC 395
E+ + K ++ E+Q L NQ + E I + N E Q L Q
Sbjct: 410 LLEENALLSHKVLKLT-EEIQDLETLNQLNTE-----IEARQSEKLNEVQEETQRLSQLL 463
Query: 396 DEMSSKYSALKTTKIKEMESIADQA-VKSEMSKLNTQLDELNSLFVKYNRKAQDIFEWKT 572
+ +K K+ +S + + +++ K N +DELNS +K +++ ++ K
Sbjct: 464 ISSQPALTEVKHLKLCLSDSQEELLQLNAKLEKANIVIDELNSAKLKLSKQVEEESSMKD 523
Query: 573 SMLKRYETL 599
+ + + L
Sbjct: 524 DLTEMNQRL 532
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 72 QIISIVPRNIVNRILKENYKVKVENVNAELMENVAVISAVSALV 203
+IIS +P N+ +++ ++ EN+ +EN IS S LV
Sbjct: 338 KIISRLPWNLAEQVIDAIIELMTENMFLNPIENTVNISITSPLV 381
>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
Ark1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 538 IVKLKTYLNGKLACLKGTKRWREQQRPAFNQTSNRITKMYNHFH 669
IV LKT +L K K+ R + N I ++Y HFH
Sbjct: 114 IVALKTLHKSELVQSKIEKQVRREIEIQSNLRHKNILRLYGHFH 157
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 26.2 bits (55), Expect = 5.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 140 RKCQCRINGKCCCHKCCKRFS 202
R+ CR GK C+ CC F+
Sbjct: 45 RRHHCRWCGKLFCYNCCNSFA 65
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/78 (28%), Positives = 31/78 (39%)
Frame = +3
Query: 204 QQYEQSEKQNIRLRKDFEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNL 383
Q+ + KQNI D + ELQR + + + I D +FN + NL
Sbjct: 285 QEVQDIMKQNI----DLKTLTMELQRAVAGYEKKISGLESRIKPDQSFNLSTPSPAPSNL 340
Query: 384 KQQCDEMSSKYSALKTTK 437
S S L+TTK
Sbjct: 341 ITLQSRYSQALSELETTK 358
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 5.2
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Frame = +3
Query: 213 EQSEKQNIRLRKD-FEIKLNELQRLLDQNQTDFESISEFISRDPAFNRNLNDERFQNLKQ 389
E ++ + +LR+D + + + ++N + S+S R+P +NLN R ++ Q
Sbjct: 1410 EDIQRSDSKLREDQSRDRTPQSRSFTNENNDNLRSVSRHTRREPQQAQNLNARR-EHESQ 1468
Query: 390 QCDEMSSKYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFV--KYNRKAQDI 557
+ D + + ++ S +S + T D K K QDI
Sbjct: 1469 KSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDI 1526
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 405 SSKYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFVKYNRKAQDIF 560
S+K S ++ KE+E+I + ++ LN L +++K+N IF
Sbjct: 112 STKLSVIQPEMKKELEAIKTAKLDNDQLALNQHSIALRGIYLKHNVNPFAIF 163
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.8 bits (54), Expect = 6.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +3
Query: 294 NQTDFESI---SEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIKE 446
NQTD+ S S+F A R+ +DE + + C+ +++ T+K E
Sbjct: 45 NQTDYSSRHHESQFSQEAHAEQRSRDDEEANSFEGSCNNSDQSWTSRVTSKKNE 98
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 6.8
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Frame = +3
Query: 192 SALVQQYEQSEKQNIRLRKDFEIK-LNE--LQRL--LDQNQTDFESISEFISRDPAFNRN 356
+++ Q SEK L++ + K L E LQ + L QNQ F+++ ++ +F N
Sbjct: 44 TSITQSPTNSEKLTDILQESQDTKALQEKYLQNIYALTQNQL-FKNVEDY-----SFY-N 96
Query: 357 LNDERFQNLKQQCDEMSSKYSALKTTKIKEMESIADQAVKSEMSKLNTQLDELNSLFVKY 536
LN E+FQ KQ + K + KIK ++S Q V + ++D L +
Sbjct: 97 LNREKFQRDKQTIVGVMRKRRHVLNKKIKRLQSHWKQ-VLGRWEENIARVDRLTEIDKTK 155
Query: 537 NRKAQDIF 560
N K + F
Sbjct: 156 NAKKSEPF 163
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +3
Query: 318 SEFISRDPAFNRNLNDERFQNLKQQCDEMSSKYSALKTTKIK--EMESIADQAVKSEMSK 491
S+F+ N++DE LK + + + S YS+L ++++ +ME ++ + S + K
Sbjct: 1065 SDFLIWLQHMEHNIHDESKHYLKSEKNFLQSVYSSLSESQVEDYQMELFREKQIFSVLCK 1124
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 363 DERFQNLKQQCDEMSSKYSALKTTKIKEMESI 458
DE+FQNL Q +E + A +TT + SI
Sbjct: 639 DEQFQNLGLQENEETDNLHACRTTTHSSVNSI 670
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 270 ELQRLLDQNQTDFESISEF 326
ELQRL+D+ Q D SI F
Sbjct: 623 ELQRLIDEKQIDLLSIPSF 641
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 25.4 bits (53), Expect = 9.0
Identities = 40/187 (21%), Positives = 82/187 (43%), Gaps = 15/187 (8%)
Frame = +3
Query: 111 ILKENYKVKVENVNAELMENVAVISAVSALVQQY------EQ-----SEKQNIRLRKDFE 257
ILK+N + + N AEL V + VS + Y E+ SE N++ R D
Sbjct: 118 ILKDNERTTISNRCAELDSQVPLSLGVSKALLDYVIFCHQEESFWPLSEPANLKKRFDEI 177
Query: 258 IKLNELQRLLDQNQTDFESISEFISRDPA--FNRNLNDERFQNLKQQCDEMSSKYSALKT 431
+ + LDQ + + D A + + ER + ++ + E + S ++
Sbjct: 178 FESLRYAKALDQIKGLKRDQETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIR- 236
Query: 432 TKIKEM-ESIADQA-VKSEMSKLNTQLDELNSLFVKYNRKAQDIFEWKTSMLKRYETLAR 605
+K++E+ + I + A ++ E+ K +T+ E + +++ DI + LK T+
Sbjct: 237 SKVEELDQEITETARLQDELFK-STEEYEQQMITIRHLESQSDIINTTINDLKSQMTITD 295
Query: 606 TTAASVQ 626
++ ++
Sbjct: 296 ESSEDLE 302
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 270 ELQRLLDQNQTDFESISEF 326
ELQRL+D+ Q D SI F
Sbjct: 623 ELQRLIDEKQIDLLSIPSF 641
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,112
Number of Sequences: 5004
Number of extensions: 45153
Number of successful extensions: 257
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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