Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25o06
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.48
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 29 0.63
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 29 0.63
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 28 0.84
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 27 1.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 1.9
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 27 2.6
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 26 3.4
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ... 26 3.4
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 25 7.8
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 25 7.8
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 7.8
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 7.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.48
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 1/87 (1%)
Frame = +2
Query: 272 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 451
T T S +T + +S+ Y + + + S P PVT C T+ V
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539
Query: 452 VEGGNVLATP-SSSRITIGGLAPYASS 529
V +TP +++ T PY S+
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTST 566
Score = 28.3 bits (60), Expect = 0.84
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Frame = +2
Query: 284 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 457
T +N T S+P S+ + +V + S P P+T C T+ +
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482
Query: 458 GGNVLATP-SSSRITIGGLAPYASS 529
V +TP +++ T PY S+
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTST 507
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 41 SAASAIPSLVDAFSSSKPPQTDTPP 115
S S+ PSL + +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 28.7 bits (61), Expect = 0.63
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 272 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 442
TG +T+ QSL N+S S I R N A FPS S +P VDL
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366
Query: 443 DVTVEGGNVLATPSSS 490
DV+ E L+TP S
Sbjct: 367 DVSDEEQRFLSTPLGS 382
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.84
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 225 LLNV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPPS*KAT 347
+L V S +++A TS LP+ V+L Q SPPS K T
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRT 171
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 5 DLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 106
D+F + +P++ ++A IPSL A SK P T+
Sbjct: 241 DIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 254 RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 367
R+Y L T ++S + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +2
Query: 335 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 424
+K RD YL NLEA FPS+ +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -3
Query: 95 GVWKKRKHRPRREWPKRQKRLKAQF 21
G WKK + + EW K ++ KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 165
Score = 25.4 bits (53), Expect = 5.9
Identities = 9/32 (28%), Positives = 18/32 (56%)
Frame = -3
Query: 116 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 21
+A + + WKK + + EW K ++ KA++
Sbjct: 145 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 176
>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 47 ASAIPSLVDAFSSSKPPQTDTPPARSMD 130
A+ P++V F + PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.0 bits (52), Expect = 7.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 35 VVSAASAIPSLVDAFSSSKPPQTDTPPARS 124
V ++S +P F SSKP + PPA S
Sbjct: 312 VSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -2
Query: 504 PIVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 370
P ++E + TL +T+T V + + +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 223 VSSTFDHPFSTPVLRSYRHRNQIEQ 297
V TFD P S P+L S + +EQ
Sbjct: 200 VQQTFDIPMSKPILVSSKTGKNVEQ 224
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 7.8
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = +3
Query: 231 NV*SSLFNACTSILPAPKPNRTVSLC----NHYQTSPP 332
+V SSL T +LP +R + LC NH+ S P
Sbjct: 214 SVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,812
Number of Sequences: 5004
Number of extensions: 33532
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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