Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o06
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330     29   2.0  
04_01_0041 - 464695-464850,467485-469029                               29   3.4  
01_05_0227 - 19512866-19514983                                         29   3.4  
02_04_0486 - 23351960-23353093                                         27   8.0  
02_04_0483 - 23305492-23306625                                         27   8.0  

>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
          Length = 426

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 455 EGGNVLATPSSSRITIGGLAPYASSHPPLRSRLHQPDH 568
           +G +  A    + +T+GG  P+ SS P + + LH   H
Sbjct: 318 QGKHAAAAARPTALTLGGAPPHESSAPQIGAMLHHHHH 355


>04_01_0041 - 464695-464850,467485-469029
          Length = 566

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 239 IIPFQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPV 415
           +I   R + D++ T  +SN + V +LP VSS  + Y D ++   +    P   P  ++ V
Sbjct: 40  LISVFRPFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAV 99

Query: 416 TVD 424
            +D
Sbjct: 100 PLD 102


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 456 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 364
           S +T + +QQ   +  ++ LG  GKTT ++L
Sbjct: 18  SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48


>02_04_0486 - 23351960-23353093
          Length = 377

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 431 WTTADVTVEGGNVLATPSSSRITIGGL 511
           W   D  VEG  +LA P S+ +  GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198


>02_04_0483 - 23305492-23306625
          Length = 377

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 431 WTTADVTVEGGNVLATPSSSRITIGGL 511
           W   D  VEG  +LA P S+ +  GGL
Sbjct: 172 WELTDFDVEGPQLLAAPISNPVLHGGL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,259,128
Number of Sequences: 37544
Number of extensions: 273044
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)