Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o06
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    29   1.8  
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z19157-5|CAE18055.2|  177|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical...    27   9.5  
AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine re...    27   9.5  

>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 248 FQRLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD 352
           F  L F++TG E KS  V + S+    +I  GYR+
Sbjct: 37  FPELNFNITGLEEKSRYVVLLSIEKYDNIRYGYRN 71


>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
           protein C08H9.2 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 495 MREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAE 388
           + ++ GV   +PP  VT+ V+       G+LR+ AE
Sbjct: 233 LTQNNGVKINIPPPHVTNEVISVTGEKDGVLRVAAE 268


>Z19157-5|CAE18055.2|  177|Caenorhabditis elegans Hypothetical
           protein ZC84.7 protein.
          Length = 177

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 448 HS*RRQCAGHPFILSHYYWR-SRPLCIKPPSPAISAT 555
           HS R+ CA    + S   W  SRP+   PPSP +  T
Sbjct: 82  HSGRKSCASVIPLSSPIAWEDSRPVSPVPPSPIVDVT 118


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 266 DLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 409
           DL G +    +  V + PNV S      + +L NL++V   +AP L I
Sbjct: 203 DLVGEKAFQQAAFVLTSPNVFSRRFDLNNKFLRNLDSVFSKNAPDLTI 250


>AF067219-14|AAC17034.1|  206|Caenorhabditis elegans Hypothetical
           protein R12E2.13 protein.
          Length = 206

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 310 LHSDTVRFGFGAGKIEVQALKRDD 239
           LHS  V++G G+G+  V A+K  D
Sbjct: 43  LHSHDVKYGSGSGQQSVTAVKNSD 66


>AC006677-9|AAF39947.1|  344|Caenorhabditis elegans Serpentine
           receptor, class h protein56 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = +2

Query: 398 SLKIPVTVDLCWTT-ADV--TVEGGNVLATPSSSRITIG 505
           ++KIP+ + L W+T  D+  TV  G  +  PS+S + +G
Sbjct: 56  NMKIPLLISLAWSTNLDLMFTVYSGPYIFFPSASGVPLG 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,312
Number of Sequences: 27780
Number of extensions: 203667
Number of successful extensions: 786
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)