Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o05
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   4.2  
SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.5  
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti...    26   5.5  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    26   5.5  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   7.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.3  
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch...    25   9.7  
SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit ...    25   9.7  

>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 450 WKETLSITY*VLLNTNRFMGAKKLLYCLLTIEFFSGKNLSKLWKKY 313
           W    ++ Y  +   + F+     L C++TI  F  KN+++ WK+Y
Sbjct: 235 WFFFYTLLYPWIALVSAFVAETMTLCCIVTI--FYDKNVNRQWKQY 278


>SPAC27F1.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 485 ECLTFQVHCYFIISKYN*NVSRNSSLAAYKLNFLFCIHVHFFLSS 619
           E ++F   C     KYN ++  ++ +  Y +N  F IH++ FL+S
Sbjct: 60  EAISFTEKC----EKYNISLFDSTFVFGYIVNCFFIIHLNTFLTS 100


>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
           subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +3

Query: 228 AHPYCSYTTTLDKNSSTILIRPYDIRQTYTFSKVSTGSYQKKIQ*SKG 371
           AH  C YTT LD N++ +L     ++Q   +S    G Y  K    KG
Sbjct: 598 AHNLC-YTTLLDSNTAELL----KLKQDVDYSVTPNGDYFVKPHVRKG 640


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 225 IAHPYCSYTTTLDKNSSTILIRPYDIRQTYTFSKVSTGSYQKKIQ*SKGSTKV 383
           I   Y  Y  TL  +SSTIL  PY+   + + S  S+ S     Q S  S ++
Sbjct: 69  ITDDYGKYENTLVSHSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQSLRL 121


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +1

Query: 253  QRSTRTHLPYSSGLTTYDKLILFPKFRQVLTRKKFNSQKAVQKFFGSHKPVSI*KYSICN 432
            +  T T +PY    +  + L LFPK +   +   +N  K  + F  S+ P+++      N
Sbjct: 1321 ESQTLTLMPYDRTSSKEEPLNLFPKLKDT-SSPLWNLVKTSRLFQSSNSPLNVASLQESN 1379

Query: 433  RQCFFPVQITQS 468
             +    V++  S
Sbjct: 1380 NKTSLGVKLLLS 1391


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 215  FLVNRSSLLFLHYNARQELIYHTHQALRHTTNLYFFQSFDRFLPEKNSIV 364
            +L   SS L   ++ + + I    Q L H  N   F   +RFLPE   IV
Sbjct: 3291 YLEQYSSFLCEFHHQKFDEIEVPGQYLLHKDNNNSFSCIERFLPEVELIV 3340


>SPBC211.06 |gfh1||gamma tubulin complex subunit
           Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -2

Query: 602 AHECKIKNSACKLQEN 555
           A+EC IK S CKL+E+
Sbjct: 465 AYECVIKPSYCKLRES 480


>SPBC1A4.01 |apc10|SPBC1E8.06|anaphase-promoting complex subunit
           Apc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 266 LVERCSVGTVGMSD*PRSLTKHHMWVVLATVKFVRLYLNELFYLEFDPNGLNI 108
           LV   ++ T   SD  +  T H  +V   ++K+V +YL       + P+ L I
Sbjct: 45  LVRDDNIDTYWQSDGSQPHTIHIKFVKRVSIKYVSMYLQYTLDESYTPSTLRI 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,358
Number of Sequences: 5004
Number of extensions: 53008
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)