Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o05
         (660 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    30   1.7  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    30   1.7  
U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical...    28   5.1  
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    27   8.9  

>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 602 AHECKIKNSACKLQENYF*KHSS 534
           ++EC+++N+AC  Q+N F K++S
Sbjct: 484 SNECRLQNAACMAQKNIFVKYNS 506


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 602 AHECKIKNSACKLQENYF*KHSS 534
           ++EC+++N+AC  Q+N F K++S
Sbjct: 492 SNECRLQNAACMAQKNIFVKYNS 514


>U64847-2|AAN84826.1|   62|Caenorhabditis elegans Hypothetical
           protein F08F3.10 protein.
          Length = 62

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = +2

Query: 269 LIYHTHQALRHTTNLYFFQSFDRFLPEK----NSIVKRQYKS 382
           +I+HT   L   TNLY    F RFL EK    N I+  Q KS
Sbjct: 14  IIFHT---LFACTNLYLLAKFHRFLDEKLMILNEILSAQAKS 52


>AL032630-10|CAA21566.1|  396|Caenorhabditis elegans Hypothetical
           protein Y62H9A.10 protein.
          Length = 396

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
 Frame = +2

Query: 218 LVNRSSLLFLHYNARQELIYHTHQAL-RHTTNLYFFQSFDRFLPEKNSIVKRQYKSFLAP 394
           L+ +    F+H    +EL+ H H+ L R  T L  F +       K  ++ R+    +  
Sbjct: 270 LLKKIVTFFIHTIRHRELMKHVHKVLPRKLTKLINFDAQSHSAVSKVKVI-RESSHPVTT 328

Query: 395 INLLVFKSTQY 427
            NL+ FK   Y
Sbjct: 329 TNLMAFKQGLY 339


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 377 CTAF*LLNFFLVRTCRNFGKSISLSYVVRPDE 282
           C AF LL  FL+R  +N  KS S +  ++ ++
Sbjct: 225 CIAFALLTIFLIRVLKNVKKSTSSARFIKENK 256


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,394,590
Number of Sequences: 27780
Number of extensions: 291558
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)