Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25o05
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   3.4  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   4.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   7.9  

>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 251 YNARQELIYHTHQALRHTTNLYFFQSFDRFLPEK 352
           YN   +LIY       +T   +  Q+F  +LP K
Sbjct: 214 YNLENKLIYFIEDIGLNTYYFFLRQAFPFWLPSK 247


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 4   YWILTTTKFVV 36
           YWI TTT FV+
Sbjct: 348 YWISTTTSFVL 358


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 212 LTKHHMWVVLATVKFVRLYLNEL 144
           +TKHH ++ + +V  V + + EL
Sbjct: 125 MTKHHNFIKVCSVNDVNMTITEL 147


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 497 KSNILQQMSYDCVICTGKKHC 435
           K +IL  +   C+IC+   HC
Sbjct: 2   KYSILLSLLITCLICSPSVHC 22


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 392 PINLLVFKSTQYVIDSVS 445
           P+N  V+K   Y++D  S
Sbjct: 937 PVNKKVYKQNDYIVDESS 954


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = -2

Query: 515 NNNVLEKSNILQQMSYDC 462
           NN+ + ++ +LQ+++ DC
Sbjct: 4   NNSSMTQTELLQELTNDC 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,948
Number of Sequences: 438
Number of extensions: 3349
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)