Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n24
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical pr...    30   0.62 
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    29   0.82 
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical pr...    28   1.9  
Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    27   3.3  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   4.4  
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ...    27   4.4  
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr...    27   5.8  
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ...    27   5.8  
AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical ...    27   5.8  
AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    27   5.8  
Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical pr...    26   7.6  
Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical p...    26   7.6  
Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical pr...    26   7.6  
AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm rece...    26   7.6  

>Z78016-6|CAB01441.1|  336|Caenorhabditis elegans Hypothetical
           protein R186.2a protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = -2

Query: 353 SSVY*TLSRLLTTPFFVNSTLIFSSRLDIFLPFFTTASHVR----IVLFCKLLNIINVSV 186
           S +Y  ++ ++  P F+  TLIF S L +F+ FF + SH+     ++L   LL++   S+
Sbjct: 13  SKIYEVINEIVY-PIFLTITLIFHSVLLVFIIFF-SPSHLNFLKFLLLTTSLLDVFATSI 70

Query: 185 L 183
           L
Sbjct: 71  L 71


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 29.5 bits (63), Expect = 0.82
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 13/89 (14%)
 Frame = -2

Query: 347 VY*TLSRLLTTPFFVNSTLIFS-SRLDIFLPFFTTASHVRIVLFCKLLNI--------IN 195
           +Y T S +LT    +N++ +F  S +   L         R  ++C LL+I        +N
Sbjct: 414 LYETASNMLTVDHLLNASAVFGISSIISRLTNIGVIPTQRADVWCTLLDINETKWRDYLN 473

Query: 194 VSVLRESISSTTLE----KCFSIDSYMTT 120
           + VL    S   LE    +C   DSYMTT
Sbjct: 474 LDVLASHSSDRQLEVDIPRCHQYDSYMTT 502


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -2

Query: 248 TASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISC 99
           T   + IV+F  L+ +I        +    + +   ID ++TT +DF  C
Sbjct: 38  TRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPMIDMFLTTHLDFTLC 87


>Z74041-4|CAD56597.1|  394|Caenorhabditis elegans Hypothetical
           protein T03F7.7b protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -1

Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>Z74041-3|CAA98522.1|  368|Caenorhabditis elegans Hypothetical
           protein T03F7.7a protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 9/59 (15%)
 Frame = -1

Query: 282 VEIGYFFAIFYNC----VPRSNRVILQVAQHHKRVRFKRIN-----FVYHIGKMFFHRF 133
           ++  +FFA F N     V ++ + I+Q+ +H K + +++IN        +IGK  F RF
Sbjct: 33  IDSPFFFARFLNANNGDVEKTRQKIIQLFEHRKLMGYEKINDLDIFTTVNIGKDCFERF 91


>AC084155-5|AAK84606.1|  433|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.7 protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +1

Query: 79  GHLNNELQEIKSILVVMYESMEKHFSNVV---DEIDSLKTDTFMMLSNLQNNTIRTWDAV 249
           GH+  E  E +  L    E +++  SN+    ++++    D    ++NL+ +     +  
Sbjct: 137 GHIIQEFHERELDLARNVEILQEENSNLTAKNEKLEETVDDLHEKVANLETSNKELTEIN 196

Query: 250 VKNGKKISNLDEKI 291
           V N +KISN  ++I
Sbjct: 197 VDNERKISNSSDEI 210


>Z92973-6|CAI79258.1|  440|Caenorhabditis elegans Hypothetical
           protein Y6G8.5 protein.
          Length = 440

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/70 (24%), Positives = 35/70 (50%)
 Frame = -2

Query: 257 FFTTASHVRIVLFCKLLNIINVSVLRESISSTTLEKCFSIDSYMTTSIDFISCSSLFKCP 78
           FF   S+   + F K +  +NVS+L +++S + +   F ++ ++T    F+     F  P
Sbjct: 219 FFNFTSYFTTLFFFKTMPRLNVSIL-QTLSVSVM--FFLMNRHLTLIPQFLVSIKRFNFP 275

Query: 77  AYTK*PTKQM 48
            +   P+ +M
Sbjct: 276 KFNNFPSSKM 285


>Z81557-7|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -2

Query: 287 FSSRLDIFLPFFTTASHVRIVLFCKLLNIINVSVL 183
           FS+   +F PF +  S++  V+FC++L  + VSV+
Sbjct: 74  FSALGTLFFPF-SVDSNIYAVIFCRVLQGLGVSVI 107


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
           protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +1

Query: 58  VGYLVYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTD 192
           + Y  Y   +   ++E+K +L V YE   +      +E + +KT+
Sbjct: 617 LSYKYYLEKVKEAVEEVKKVLGVNYEDCLEKIGKAQEETEKVKTE 661


>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
            protein Y42A5A.1 protein.
          Length = 1045

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 70   VYAGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 249
            VY+  +N+  QE    L   +  M +H+    D I      T +  +N++ N+ R W  V
Sbjct: 873  VYSAAINDGTQEDFDFLYKKW--MIEHYMMEHDNIF-----TGLCTTNIRENSDRAWRQV 925

Query: 250  VKNGKK 267
            +KNG +
Sbjct: 926  IKNGAR 931


>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
           protein K08E7.9 protein.
          Length = 1321

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQE--IKSIL 120
           T+  WA   I +  YL  A  +NN L+   +KSIL
Sbjct: 146 TVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSIL 180


>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
           protein.
          Length = 1321

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 22  TMNFWATFSICLVGYLVYAGHLNNELQE--IKSIL 120
           T+  WA   I +  YL  A  +NN L+   +KSIL
Sbjct: 146 TVGMWAAGQIIVTCYLYVAEQMNNRLRREFVKSIL 180


>AC084161-3|AAK29731.2|  249|Caenorhabditis elegans Hypothetical
           protein Y92H12A.3 protein.
          Length = 249

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 145 KHFSNVVDEIDSLKTDTFMMLSNLQN--NTIRTWDAVVKNGKKISNL 279
           +HFS+   E     T+TFM  S+LQ    +I+  D  V   KK  NL
Sbjct: 140 QHFSSTCVEKKQRMTETFMSRSHLQEAFASIKVNDKAVVLVKKYGNL 186


>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 133 ESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWD 243
           +S   H++NV   I     D  ++LSN ++ +IR WD
Sbjct: 245 DSCRGHYNNVSSVIFHPNAD--LILSNSEDKSIRVWD 279


>Z93374-1|CAB07554.1|  346|Caenorhabditis elegans Hypothetical
           protein C06C6.2 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 374 FFFNLVISSVY*TLSRLLTTPFF 306
           FF  + +S++Y TL   ++TPFF
Sbjct: 256 FFMQIPLSAIYITLFANISTPFF 278


>Z81130-10|CAB03418.1|  653|Caenorhabditis elegans Hypothetical
           protein T23G11.6a protein.
          Length = 653

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 148 HFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 282
           + SN+V+     + D+   L NLQ N +++   ++KN   I +LD
Sbjct: 409 NISNIVENTFENQKDSLKKL-NLQKNKLKSLPNLIKNLPAIESLD 452


>Z81130-9|CAI70413.1|  616|Caenorhabditis elegans Hypothetical
           protein T23G11.6b protein.
          Length = 616

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 148 HFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKISNLD 282
           + SN+V+     + D+   L NLQ N +++   ++KN   I +LD
Sbjct: 409 NISNIVENTFENQKDSLKKL-NLQKNKLKSLPNLIKNLPAIESLD 452


>AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm
           receptor protein 39 protein.
          Length = 329

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 338 TLSRLLTTPFFVNSTLIFSSRLDIFLPFFTTASHVRIVLFCKL 210
           TL RLL  P+  N  +  ++ L + +  F  +S   I+++C L
Sbjct: 177 TLPRLLIVPYDQNGNVRINNVLYLCIGTFLLSSQYLIIVYCGL 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,045,365
Number of Sequences: 27780
Number of extensions: 154836
Number of successful extensions: 565
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)