Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n21
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    29   3.0  
05_01_0546 - 4769565-4769612,4769873-4770037,4770192-4770200,477...    27   9.3  
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924...    27   9.3  

>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +3

Query: 222 PLCPCRFVPSFEQ---HLPA*SSWQEHPDQTSLRHDVAPHPIPERKRSRPE 365
           PL P   + S E+   H  A  S ++   +TS RH   P P PE K+  P+
Sbjct: 77  PLKPSLSLSSSEEESTHADAAKSGKKEEAETSERHSSPPPPPPEAKKVTPD 127


>05_01_0546 -
           4769565-4769612,4769873-4770037,4770192-4770200,
           4770412-4770680,4772931-4772994
          Length = 184

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 237 RFVPSFEQHLPA*SSWQEHPDQTSLRHDVAPHPIPERKR 353
           R +  F+Q LP    W+EH    SLR ++       R++
Sbjct: 68  RSINKFKQVLPQRQEWREHAALNSLRREIESKEEKSRRK 106


>04_04_0350 +
           24591002-24591123,24592020-24592091,24592343-24592448,
           24593138-24593242,24593693-24593815,24594163-24594630,
           24595226-24595351,24595430-24595516,24595615-24595701,
           24595807-24595903,24596519-24596636,24596923-24596995,
           24597504-24597566,24597666-24597832,24598444-24598631,
           24598909-24599057,24599193-24599442,24599597-24599855,
           24599977-24600073,24606696-24606776,24606914-24606970,
           24607264-24607395,24607476-24607562,24607941-24608049,
           24608134-24608270,24608841-24608945,24609566-24609654,
           24609757-24609859,24609960-24610064,24610282-24610293,
           24611013-24611078
          Length = 1279

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 591 NTSNISRCHRMGKTFTPERSRPILLKLCDMNLRSKVWAAKTSLKGSGIT 445
           ++  +S  +R   + TPERS   + +L D +L  + W  + S  GSG +
Sbjct: 305 DSKTVSTSNRENTSGTPERSFSSVHQLEDSDLSDEDWNDEDSGSGSGFS 353


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,185,267
Number of Sequences: 37544
Number of extensions: 377421
Number of successful extensions: 1096
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)