Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n19
         (507 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...    31   0.13 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    28   0.70 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   0.92 
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.1  
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    26   2.8  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    26   3.7  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    25   4.9  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.6  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 298 GVIEELNKKLAFASESLAEANEKIIHFANALVTANAGL-VQANTMLNEARR 149
           G++    KK+        E+ EK+ H  + ++ A AGL   AN ++N ARR
Sbjct: 42  GIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARR 92


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 28.3 bits (60), Expect = 0.70
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 6    LRFCARRNAYFSPPNAHTANECSSWGLLGLAI 101
            LR C   N+ F  PN+HT N  S +  + L I
Sbjct: 906  LRICTIPNSIFDSPNSHTTNSNSFFTKVSLDI 937


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 448 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVL-CTGKYAPAVKMDTNYGVI 290
           L+ K+GV+ L+ K KLP++V  +  ++     + L    K+     +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -3

Query: 292 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNE----ARRETAQLANR 125
           IEE  K+  FAS S     E ++   +ALV+  A L   ++ + E    + R+   L  +
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKK 232

Query: 124 MADIAQ 107
           +A +AQ
Sbjct: 233 LAGLAQ 238



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 316 KMDTNYGVIEELNKKLAFASESLAEANEKI 227
           K++ +   +++L KKLA  ++   E NEKI
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKI 247


>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 20/58 (34%), Positives = 27/58 (46%)
 Frame = -3

Query: 292 IEELNKKLAFASESLAEANEKIIHFANALVTANAGLVQANTMLNEARRETAQLANRMA 119
           IEE  KKL   +E L++ N  +      L T N  LV+    LN    E  QL  ++A
Sbjct: 90  IEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVKT---LNSLNSEFLQLLRKIA 144


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 217 ANALVTANAGLVQANTMLNEARRETAQLA--NRMADIAQDVIAKPN 86
           A+A V + A  +  ++ +N  R + A  A  NRMAD+  + + K N
Sbjct: 304 ASAAVDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKAN 349


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 94  WLSRLAQCPPCGWPAAPFRGAPRL 165
           W+SR   CP CG    P  G  +L
Sbjct: 175 WISRYRFCPGCGKRNIPTMGGTKL 198


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 194 VGGHQRIGKMYNFFVGLGQTFASKRQLFI*LFNHTIICVHLDGRRVLAR 340
           + G QRI   +N FV + +     + +   LFN   +      RR +A+
Sbjct: 485 LAGEQRIADSFNVFVKMAELSILLQNVLQHLFNARAVMTMSKNRRTVAQ 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,032,559
Number of Sequences: 5004
Number of extensions: 37384
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)