Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25n19
(507 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ100992-1|AAZ08998.1| 120|Homo sapiens immunoglobulin heavy ch... 31 2.3
BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 1... 30 5.3
AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein. 30 5.3
AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment e... 30 5.3
AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein. 30 5.3
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 29 9.3
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 29 9.3
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 29 9.3
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 29 9.3
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 29 9.3
AY354204-1|AAQ63889.2| 972|Homo sapiens retinoic acid induced 1... 29 9.3
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 29 9.3
AK055882-1|BAB71034.1| 634|Homo sapiens protein ( Homo sapiens ... 29 9.3
AF384856-1|AAL05629.1| 576|Homo sapiens peptidoglycan recogniti... 29 9.3
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 29 9.3
AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2 ... 29 9.3
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 29 9.3
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 29 9.3
>DQ100992-1|AAZ08998.1| 120|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 120
Score = 31.1 bits (67), Expect = 2.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 12 FCARRNAYFSPPNAHTANECSSWG 83
+CAR + +S PNAH + C WG
Sbjct: 95 YCARDSHPYSRPNAHRISACDYWG 118
>BC052988-1|AAH52988.1| 980|Homo sapiens retinoic acid induced 14
protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 316 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 146
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 578 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 637
Query: 145 TAQLANRMADIAQ 107
+L ++++++Q
Sbjct: 638 IDELNKQVSELSQ 650
>AY317139-1|AAP84319.1| 983|Homo sapiens RAI14 isoform protein.
Length = 983
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 316 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 146
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 581 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 640
Query: 145 TAQLANRMADIAQ 107
+L ++++++Q
Sbjct: 641 IDELNKQVSELSQ 653
>AF155135-1|AAF44722.1| 980|Homo sapiens novel retinal pigment
epithelial cell protein protein.
Length = 980
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 316 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 146
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 578 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 637
Query: 145 TAQLANRMADIAQ 107
+L ++++++Q
Sbjct: 638 IDELNKQVSELSQ 650
>AB037755-1|BAA92572.1| 989|Homo sapiens KIAA1334 protein protein.
Length = 989
Score = 29.9 bits (64), Expect = 5.3
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = -3
Query: 316 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 146
+M ++Y VIE +NK+ AF E EA E+I+ + L + +A M R
Sbjct: 587 EMKSSYCSVIENMNKEKAFLFEKYQEAQEEIMKLKDTLKSQMTQEASDEAEDMKEAMNRM 646
Query: 145 TAQLANRMADIAQ 107
+L ++++++Q
Sbjct: 647 IDELNKQVSELSQ 659
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 206 QRIGKMYNFFVGLGQTFASKRQLFI*LF-NHTIICVHLDGRRVLARAQHLRNHLLQQPRL 382
+R+ K NF +G F K+ L N ++ V +D R + A L+ +PR
Sbjct: 92 RRLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRK 151
Query: 383 QFHSVREL 406
+FH + L
Sbjct: 152 RFHLLSRL 159
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287
>AY354204-1|AAQ63889.2| 972|Homo sapiens retinoic acid induced 14
isoform protein.
Length = 972
Score = 29.1 bits (62), Expect = 9.3
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = -3
Query: 316 KMDTNY-GVIEELNKKLAFASESLAEANEKIIHFANALVT--ANAGLVQANTMLNEARRE 146
+M ++Y VIE +NK+ AF E EA E I+ + L + +A M R
Sbjct: 570 EMKSSYCSVIENMNKEKAFLFEKYPEAQEGIMELKDTLKSQMTQEASDEAEDMKEAMNRM 629
Query: 145 TAQLANRMADIAQ 107
+L ++++++Q
Sbjct: 630 IDELNKQVSELSQ 642
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 206 QRIGKMYNFFVGLGQTFASKRQLFI*LF-NHTIICVHLDGRRVLARAQHLRNHLLQQPRL 382
+R+ K NF +G F K+ L N ++ V +D R + A L+ +PR
Sbjct: 92 RRLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRK 151
Query: 383 QFHSVREL 406
+FH + L
Sbjct: 152 RFHLLSRL 159
>AK055882-1|BAB71034.1| 634|Homo sapiens protein ( Homo sapiens
cDNA FLJ31320 fis, clone LIVER1000542, moderately
similar to Mus musculus TAGL-alpha mRNA. ).
Length = 634
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 118 PPCGWPAAPFRGAPRL 165
P C W AAP+RG P+L
Sbjct: 384 PRCRWGAAPYRGRPKL 399
>AF384856-1|AAL05629.1| 576|Homo sapiens peptidoglycan recognition
protein L precursor protein.
Length = 576
Score = 29.1 bits (62), Expect = 9.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +1
Query: 118 PPCGWPAAPFRGAPRL 165
P C W AAP+RG P+L
Sbjct: 384 PRCRWGAAPYRGRPKL 399
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 219 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 264
>AF247662-1|AAF72519.1| 228|Homo sapiens SR-related protein LD2
protein.
Length = 228
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 165 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 210
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 29.1 bits (62), Expect = 9.3
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 206 QRIGKMYNFFVGLGQTFASKRQLFI*LF-NHTIICVHLDGRRVLARAQHLRNHLLQQPRL 382
+R+ K NF +G F K+ L N ++ V +D R + A L+ +PR
Sbjct: 84 RRLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRK 143
Query: 383 QFHSVREL 406
+FH + L
Sbjct: 144 RFHLLSRL 151
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 29.1 bits (62), Expect = 9.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 249 WPRPTKKLYILPMRW*PPTPDWCKLTQC*TRRA-AKRRSWPTAWRT 115
WPRP + + P R PP P W + RR+ + RR P R+
Sbjct: 242 WPRPPPRRFSPPRRMLPPPPMWRRSPPRMRRRSRSPRRRSPVRRRS 287
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,385,369
Number of Sequences: 237096
Number of extensions: 1512480
Number of successful extensions: 4487
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 4329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4487
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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