Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25n19
(507 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical... 29 2.6
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 28 3.4
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 28 3.4
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 28 3.4
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 27 5.9
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 27 5.9
U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical pr... 27 7.8
AC084154-5|AAO91683.1| 335|Caenorhabditis elegans Hypothetical ... 27 7.8
>AF100306-10|AAC68926.1| 798|Caenorhabditis elegans Hypothetical
protein T24C4.7 protein.
Length = 798
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 251 TFASKRQLFI*LFNHTIICVHLDGRRVLARAQHLRNHLLQQPRL 382
TF + R FN+ ++C D R V A LR HL QQ L
Sbjct: 101 TFVAHRYKCHGSFNNNVMCPLGDCREVFASLYTLRRHLSQQHEL 144
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 373 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 197
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 196 ------NAGLVQANTMLNEARRETAQLANRMAD 116
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical protein
R06C7.10 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 373 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 197
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 196 ------NAGLVQANTMLNEARRETAQLANRMAD 116
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 28.3 bits (60), Expect = 3.4
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Frame = -3
Query: 373 LLEEVIPQVLCTGKYAPAVKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVTA- 197
L ++ PQ+ C +KM V+E KK A +S EA K+ + L+ A
Sbjct: 839 LFGKLRPQLKCGKMAEEMIKMAEEQKVLEAEAKKAESARKSQEEAYAKLSAERSKLLEAL 898
Query: 196 ------NAGLVQANTMLNEARRETAQLANRMAD 116
+A + + T LN AR+E + N D
Sbjct: 899 ELTQGGSAAIEEKLTRLNSARQEVEKSLNDAND 931
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 205 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 26
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 25 LRAQKR 8
+ + R
Sbjct: 65 VASDTR 70
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = -3
Query: 205 VTANAGLVQANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSLAVCALGGEKYAF 26
+TA A M +A +E A M+ ++ + + NP + + CA+ GE +A
Sbjct: 7 ITAVANATNEMAMFKQAMKEVAAHPEWMS--SRQIERQRWNPYSMEGGSTCAISGENFAI 64
Query: 25 LRAQKR 8
+ + R
Sbjct: 65 VASDTR 70
>U58746-7|AAB00628.2| 461|Caenorhabditis elegans Hypothetical
protein R05G6.10 protein.
Length = 461
Score = 27.1 bits (57), Expect = 7.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -3
Query: 139 QLANRMADIAQ---DVIAKPNNPQLLHSLAVCALGGEKYAFL 23
QLA ++ D+ Q V NPQ+L L + ++ GEK + L
Sbjct: 396 QLAEQLRDVIQWKSTVCTFEKNPQVLQYLLITSVSGEKDSML 437
>AC084154-5|AAO91683.1| 335|Caenorhabditis elegans Hypothetical
protein Y22D7AR.14 protein.
Length = 335
Score = 27.1 bits (57), Expect = 7.8
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -3
Query: 367 EEVIPQVLCTGKYAPA----VKMDTNYGVIEELNKKLAFASESLAEANEKIIHFANALVT 200
+++I +++ G AP+ +KMD+ VIE++NK + ++A+ K++ A
Sbjct: 78 DQLISELVNFGDIAPSQILDIKMDSLTNVIEKINKIQKASDFTMADRLLKLVSVAEKAEW 137
Query: 199 ANAGL 185
NA L
Sbjct: 138 LNATL 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,675,678
Number of Sequences: 27780
Number of extensions: 230333
Number of successful extensions: 764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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