Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n12
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    29   0.37 
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    25   6.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.1  

>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -2

Query: 138 RVHSCSP*YVYFNPELSCFSRTFSIYYIDS 49
           RV S  P   YFNP +SC SRT+  Y I S
Sbjct: 135 RVWSVFPAPKYFNPRISCESRTYE-YLIPS 163


>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 494 TMLHLHNLFYLSLSILVFSITPCF 423
           T  HL  +FY +L I+   I PCF
Sbjct: 61  TTSHLMGMFYRTLRIVDNGIKPCF 84


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +2

Query: 260 NSTLYVSYDCFATELGRIALPTWVTISPITSSCQLAITACWY 385
           N+ ++  Y  F ++L +   P    +  + S+    +TACWY
Sbjct: 807 NTAIWEVYIFFESKLRQENKPKIRAMKILKSASNAVVTACWY 848


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,507
Number of Sequences: 5004
Number of extensions: 40307
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)