Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n12
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    29   1.8  
Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical p...    28   5.6  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    27   7.4  
AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear recep...    27   9.7  
AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormo...    27   9.7  

>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 191 RVWHLPL-TQSPSCFWVQSECIHVHHNMFISILNYHVFPELFQYI 60
           R+WH  L +QS   F     C H   N   +I N+H++P  FQ I
Sbjct: 326 RLWHSQLGSQSDGKFTASLLCTHKPEND--TIHNFHIYPMSFQKI 368


>Z93380-6|CAB07602.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 168 TIAIMLLGTERVHSCSP*YVYFNPELSCFSRTFSIYYIDSI 46
           TIA+ L G    + C P  +YF  +L+  +R F I  + S+
Sbjct: 283 TIALFLPGITYANLCLPLVIYFKTKLTIRNRKFRIAVMTSM 323


>Z81587-13|CAB04710.2|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.7 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 168 TIAIMLLGTERVHSCSP*YVYFNPELSCFSRTFSIYYIDSI 46
           TIA+ L G    + C P  +YF  +L+  +R F I  + S+
Sbjct: 283 TIALFLPGITYANLCLPLVIYFKTKLTIRNRKFRIAVMTSM 323


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 278 SYDCFATELGRIALPTWVTISPITSSCQLAITA 376
           S D     +GR+ + TW  +SP T SC+L +++
Sbjct: 337 SEDAHPASVGRVNV-TWEELSPSTISCRLPVSS 368


>AY305837-1|AAR11982.1|  376|Caenorhabditis elegans nuclear receptor
           NHR-124 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 242 KFISYENSTLYVSYDCFATELGRIALPTWVTISP 343
           K +++++  L V+YD F  + GR+  PT   + P
Sbjct: 210 KNVAFKSHHLSVAYDSFIQKKGRVLAPTGTEMFP 243


>AF016443-4|AAC24282.2|  376|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 124 protein.
          Length = 376

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 242 KFISYENSTLYVSYDCFATELGRIALPTWVTISP 343
           K +++++  L V+YD F  + GR+  PT   + P
Sbjct: 210 KNVAFKSHHLSVAYDSFIQKKGRVLAPTGTEMFP 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,520
Number of Sequences: 27780
Number of extensions: 236209
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)