Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25n03
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...   101   7e-22
AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GA...    28   6.0  
AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GA...    28   6.0  
AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion def...    28   6.0  
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score =  101 bits (241), Expect = 7e-22
 Identities = 60/218 (27%), Positives = 105/218 (48%)
 Frame = +3

Query: 30  DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 209
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 210 RRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGN 389
           RR+ +              +  +  ++L  +  +    +++K+ D++SE+A N IDD G+
Sbjct: 62  RRVLARDWDAIWETLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGD 121

Query: 390 NQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKGMLISALQPNES 569
             W   L+ M  C  ++D       + +    P +FGNR    L  +K +++        
Sbjct: 122 MTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLK-VVLEKCMATPD 180

Query: 570 MALRTQAVKAVGAFILLHDKEPIIQKHFSDVLLPLMQV 683
           + ++  AV+AV AF + +D+E  + +  + ++  ++QV
Sbjct: 181 LQIKATAVRAVIAFAVDNDEEKDVVRLMTSLVPNVLQV 218


>AY383563-2|AAQ96594.1|  533|Caenorhabditis elegans excitatory GABA
           receptor EXP-1A protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 718 SHHQLLSIDRTITCIKGRRTSLKCFCMM 635
           SH  LL +D T   +  RR SL C C M
Sbjct: 200 SHRSLLRLDETGKLLYSRRISLVCECTM 227


>AY383563-1|AAQ96595.1|  539|Caenorhabditis elegans excitatory GABA
           receptor EXP-1B protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 718 SHHQLLSIDRTITCIKGRRTSLKCFCMM 635
           SH  LL +D T   +  RR SL C C M
Sbjct: 206 SHRSLLRLDETGKLLYSRRISLVCECTM 233


>AF098990-1|AAC67448.3|  539|Caenorhabditis elegans Expulsion
           defective (defecation)protein 1 protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 718 SHHQLLSIDRTITCIKGRRTSLKCFCMM 635
           SH  LL +D T   +  RR SL C C M
Sbjct: 206 SHRSLLRLDETGKLLYSRRISLVCECTM 233


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 291  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 470
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 471  MFTSV 485
               S+
Sbjct: 1183 AADSI 1187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,726,670
Number of Sequences: 27780
Number of extensions: 349590
Number of successful extensions: 966
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)