Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m21
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786...    32   0.39 
11_06_0337 - 22454281-22456399,22458520-22459388                       30   1.6  
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           29   2.7  
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909...    28   4.8  
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    28   4.8  
09_04_0279 - 16349156-16349788,16352409-16353344                       28   6.3  
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554...    27   8.3  

>08_02_1041 -
           23876849-23876959,23877853-23878046,23878621-23878691,
           23878956-23879009,23879051-23879187
          Length = 188

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 188 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI--DGFHDNI 310
           + ++T K  +  D+I +KV+  F ++E+E+ D    DG + NI
Sbjct: 146 VEAITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSNDGVNANI 188


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 230 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 328
           +KS V++    L +EY+  I G HD+IQY  DE
Sbjct: 12  VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/86 (26%), Positives = 44/86 (51%)
 Frame = +2

Query: 17  LYHCKMCVIFPVEIDVSQTVIRDCHVDEQTRELVYINKIMNTQLTKPVLMMFNISGPIRS 196
           LY  +  V+F  +I  S+ V+    ++ +T +  Y ++ +++ L      MF  +GP+ S
Sbjct: 535 LYFIEQDVLFSFDIR-SKRVLMSKSLEMRT-DFCYPSQFLHSWLLPS--NMFEENGPVES 590

Query: 197 VTRKNNDLRDRIKSKVDEQFDQLERE 274
               +NDL ++  S  DE+ D  + E
Sbjct: 591 DKLPSNDLDEQSDSDDDEESDNEDDE 616


>12_02_0741 -
           22690452-22690528,22690693-22690813,22690871-22690951,
           22691048-22691096,22691324-22691409,22691494-22691571,
           22691647-22691796,22691884-22691922,22692194-22692283,
           22692568-22692630,22692722-22692791,22693109-22693155,
           22693268-22693330,22693411-22693461,22693702-22693785,
           22693932-22693996,22694322-22694378,22694452-22694569,
           22694664-22694714,22694789-22694875,22694956-22695035,
           22695962-22696127
          Length = 590

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 214 VVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGH 62
           ++  R+A     +VK   + FC + V N++N+H +  L+    I  N+  H
Sbjct: 229 LLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQKVH 279


>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +2

Query: 227 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 406
           R+K ++ E   +L +   +++     N++  ++   S+    GSVLK+K  KIL   D  
Sbjct: 35  RLKEELAETSLRLRQMRGEELHRL--NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL 92

Query: 407 DKKSIETYEK 436
           ++K ++  E+
Sbjct: 93  ERKRMQLIEE 102


>09_04_0279 - 16349156-16349788,16352409-16353344
          Length = 522

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +2

Query: 98  EQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREY 277
           E   EL ++N + N     P L   ++ G ++ + + +  L   ++  VDE  ++ +RE 
Sbjct: 218 ELLEELFFLNGVFNVGDQIPWLEWLDLQGYVKRMKKVSKALDQLLEHVVDEHSERRQREG 277

Query: 278 SDKIDG 295
           +  + G
Sbjct: 278 NGFVAG 283


>04_04_1356 +
           32854585-32854832,32854948-32855148,32855270-32855447,
           32856389-32856651,32856800-32857040,32857317-32858456,
           32858856-32858993
          Length = 802

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 533 IALGCCRSQIP--ASTRIPPRSSRCVCRPIGANSIFRKFQ*TFYRYN 399
           I   CC   +P  AS +  P  +   C  IG +  F+K+Q     YN
Sbjct: 396 ICTSCCLFGLPWIASCKPCPSDTEEACPSIGRSGNFKKYQCAMNEYN 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,801,003
Number of Sequences: 37544
Number of extensions: 289759
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)