Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m21
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical ...    31   0.60 
AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical...    29   1.8  
AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical...    29   1.8  
AF000261-3|AAB52924.1|  464|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.     29   3.2  
AF016655-9|AAK31440.1|  348|Caenorhabditis elegans Hypothetical ...    29   3.2  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AF067613-7|AAY86236.1|  123|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical p...    28   5.6  
AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine re...    28   5.6  
U23449-5|AAC24296.2|  365|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AL032632-9|CAA21588.2| 1464|Caenorhabditis elegans Hypothetical
            protein Y11D7A.14 protein.
          Length = 1464

 Score = 31.1 bits (67), Expect = 0.60
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = +2

Query: 188  IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH---YSVSCQNGS 358
            I+   +K ++L++  + + +E   +LER+  DK     D ++  KD H        Q   
Sbjct: 1072 IQKQAKKIDELKEECRKRKNEA-SRLERKLEDKEAMMADCVKELKDSHKERLKEMEQKVE 1130

Query: 359  VLKSKFAKILKSHDYTDKKSIETYEK 436
             +K K +K L++ + T K  IET+++
Sbjct: 1131 DVKRKNSK-LENENSTQKSQIETFQR 1155


>AF067608-15|AAO38679.1|  470|Caenorhabditis elegans Hypothetical
           protein B0511.14b protein.
          Length = 470

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 179 SGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKD 325
           +GP  S  R+++D   R K K DEQ D     Y +KI   + NIQ  ++
Sbjct: 310 TGPSTSSERRSSDPTIRKKGKTDEQLD----HYHEKIREKYRNIQKIQE 354


>AF067608-14|AAK95864.1|  551|Caenorhabditis elegans Hypothetical
           protein B0511.14a protein.
          Length = 551

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +2

Query: 179 SGPIRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKD 325
           +GP  S  R+++D   R K K DEQ D     Y +KI   + NIQ  ++
Sbjct: 310 TGPSTSSERRSSDPTIRKKGKTDEQLD----HYHEKIREKYRNIQKIQE 354


>AF000261-3|AAB52924.1|  464|Caenorhabditis elegans Hypothetical
           protein F19B10.4 protein.
          Length = 464

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +2

Query: 209 NNDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSV 340
           N DL ++   ++ + FD+L  +  D +D   ++I++ K   YS+
Sbjct: 420 NEDLDEQSLEEIQKAFDELFEKVRDDLDDLENDIEWAKAISYSM 463


>Z81586-10|CAD56598.1|  349|Caenorhabditis elegans Hypothetical
           protein T05F1.13 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 254 FDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLK 367
           FD +E E  DK    +   Q+++DE   + C NG  +K
Sbjct: 291 FDGIEYELFDK--NLNSGTQFYEDEEKKIDCLNGRNIK 326


>Z81072-6|CAB03017.2|  196|Caenorhabditis elegans Hypothetical
           protein F30A10.9 protein.
          Length = 196

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 44/149 (29%), Positives = 61/149 (40%), Gaps = 4/149 (2%)
 Frame = +2

Query: 56  IDVSQTVIRDCHVDEQTRELVYINKIMNTQLTKPVLMMFNIS-GPIRSVTRKNNDLRDRI 232
           I   Q VIR   VDEQ  +LV   KI     +  + M +N   GP   V    N +   +
Sbjct: 25  IKEEQRVIRTPKVDEQELKLVRAPKI-----SSAMFMKYNTQLGPPFHVIVDTNFVNFAV 79

Query: 233 KSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFA-KILKSHDYTD 409
           K+++D     + + + D +  F   I Y  D    V  +   V + K A K+LK      
Sbjct: 80  KNRID-----MFQGFMDCL--FAKTIVYATD---CVLAELEKVRRFKIALKVLKDPRVQR 129

Query: 410 KKSIE--TYEKYCLPQLVDKHNDCYVAVC 490
            K     TY   CL Q V +H    VA C
Sbjct: 130 LKCEHKGTYADDCLVQRVTQHKCYIVATC 158


>Z79757-3|CAC42307.1|  585|Caenorhabditis elegans Hypothetical
           protein F55B12.3b protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 159 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 43
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 413 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 451


>Z79757-2|CAB02129.2|  587|Caenorhabditis elegans Hypothetical
           protein F55B12.3a protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 159 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 43
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>AF020788-1|AAC47809.1|  587|Caenorhabditis elegans SEL-10 protein.
          Length = 587

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -2

Query: 159 TGFVNCVFIILLMYTNSLVCSST*QSRITVWDTSISTGK 43
           TG  N V+ +L     S+VCS +  + I VWD +   G+
Sbjct: 415 TGHNNRVYSLLFESERSIVCSGSLDTSIRVWDFTRPEGQ 453


>AF016655-9|AAK31440.1|  348|Caenorhabditis elegans Hypothetical
           protein C17F4.5 protein.
          Length = 348

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 20/74 (27%), Positives = 30/74 (40%)
 Frame = +2

Query: 221 RDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHD 400
           R  ++S  D   D   R      DG  +NI+   + HY  +  N  ++K  FA      D
Sbjct: 205 RIHLESADDYTVDDFMRLIEKWADGTTENIKTAGNFHYKFTLSNPELVKQVFALSEVLGD 264

Query: 401 YTDKKSIETYEKYC 442
              K  I+ + K C
Sbjct: 265 AGKKDPIKFFGKVC 278


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
            F44E2.4 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 335  SVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLVDKHNDCYVAVCVLKP 502
            ++SC  G   + KFA+ ++S   T K+   +  +  LP+ +D   D  VA C   P
Sbjct: 910  NLSCLFGQAQEPKFAQCIRSTISTLKQFNLSTLRAVLPKFIDCTRDIVVAKCGESP 965


>AF067613-7|AAY86236.1|  123|Caenorhabditis elegans Hypothetical
           protein F56D6.12 protein.
          Length = 123

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 212 NDLRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQN 352
           +D  D+  SK+   FD   +  +D I  F+D     K EH  ++ +N
Sbjct: 20  DDTHDKTVSKLKNDFD---KNTADSIKNFNDEAAKNKKEHEKIAAEN 63


>Z49127-11|CAA88952.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 218 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 358
           L D +K   D  F +LE+    KID   D ++   D+H   + C  G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249


>AL033535-4|CAA22134.2|  452|Caenorhabditis elegans Hypothetical
           protein F13D12.9 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 218 LRDRIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEH-YSVSCQNGS 358
           L D +K   D  F +LE+    KID   D ++   D+H   + C  G+
Sbjct: 202 LFDEVKPVTDVDFVELEKAQYKKIDRLIDQLELKADDHVLEIGCGWGA 249


>AF022980-3|AAG24187.2|  396|Caenorhabditis elegans Serpentine
           receptor, class w protein2 protein.
          Length = 396

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 15/69 (21%), Positives = 35/69 (50%)
 Frame = -1

Query: 484 RHVAVVVFVDQLGQTVFFVSFNRLFIGIIMTF*NFSKLAFQHAAILATYRIVFIFKILDV 305
           ++V +  + D++     +V     F  + +   + S L  +    ++ YRI+ +  ILD+
Sbjct: 25  KYVEIPSWFDEVFLKFNYVIAILQFFAVAINLIHLSVLTRKELRAISIYRIMIVICILDI 84

Query: 304 IVKSINFIA 278
           I + ++FI+
Sbjct: 85  ISEILSFIS 93


>U23449-5|AAC24296.2|  365|Caenorhabditis elegans Hypothetical
           protein K06A1.1 protein.
          Length = 365

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +2

Query: 236 SKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSC 346
           S+ DE+ ++ ++  S +   F++N++ F   H  +SC
Sbjct: 18  SQCDEEDEEEQQRQSSQRPPFYENMRTFAPSHMHISC 54


>Z82268-4|CAB05199.1|  741|Caenorhabditis elegans Hypothetical
           protein F52B11.3 protein.
          Length = 741

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 20/64 (31%), Positives = 34/64 (53%)
 Frame = +2

Query: 278 SDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIETYEKYCLPQLV 457
           S+KID ++DN    +      S  N   +K+   +I + +D+T  +S+E  E YCL + +
Sbjct: 194 SEKID-YYDNNCLSRQNRCGPSGGNLVFVKTTNFEI-RYYDHT--QSVEAQESYCLQKCL 249

Query: 458 DKHN 469
           D  N
Sbjct: 250 DSLN 253


>U46675-1|AAB52645.2|  524|Caenorhabditis elegans Hypothetical
           protein F35A5.4 protein.
          Length = 524

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
 Frame = -3

Query: 563 LCYQSGCTQKIALGC---CRSQIPASTRIPPRSSRC--VCRPIGANSIFRKF 423
           +C Q+ C  +    C   C  QI  S  +PP + RC  +C P  + S  +++
Sbjct: 227 ICSQANCIPQCMPRCLPTCIQQIQISVPLPPPAPRCDSMCMPSCSPSCVQQY 278


>U40413-5|AAK39175.1|  599|Caenorhabditis elegans Hypothetical
           protein C18B2.6 protein.
          Length = 599

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 8   AFELYHCKMCVIFPVEIDVSQTVIRDC 88
           A +LYHC    +FP + ++S+ ++  C
Sbjct: 403 ATQLYHCFFTKLFPEDSNLSKAIVDAC 429


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,576,127
Number of Sequences: 27780
Number of extensions: 291558
Number of successful extensions: 934
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)