Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m20
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch...    86   1e-18
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    36   0.002
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   1.1  
SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    25   1.9  
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    25   2.5  
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac...    25   3.3  
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos...    24   5.8  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    23   7.7  
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    23   7.7  
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    23   7.7  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    23   7.7  
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    23   7.7  

>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 96

 Score = 85.8 bits (203), Expect = 1e-18
 Identities = 41/71 (57%), Positives = 53/71 (74%)
 Frame = +2

Query: 2   ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
           I G L SVDQ+LN+KL +ISV+D+ KYPHM +VK+ FIRGSVVRYV + +  VDT LL D
Sbjct: 25  IRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLAD 84

Query: 182 AARKEATVSTR 214
           A R++   + R
Sbjct: 85  ACRRDLANNKR 95


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +2

Query: 8   GTLHSVDQYLNIKLSDI--SVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
           G L + D Y+N+ L ++  ++ D +K+     +  C+IRG+ ++Y+++  DEV +Q+ + 
Sbjct: 27  GHLENCDNYMNLTLREVIRTMPDGDKF---FRLPECYIRGNNIKYLRI-QDEVLSQVAKQ 82

Query: 182 AARKEATVSTR 214
            A++     +R
Sbjct: 83  QAQQRENRGSR 93


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +2

Query: 74  EKYPHMLSVKNCFIRGSVVRYVQLPAD 154
           E + H   + NCF+  +    V LP+D
Sbjct: 398 ESFAHACGIYNCFLSSNAPNAVNLPSD 424


>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 183 ASWRSWVSTSSAGSCTYRTTEPLIKQFFTDNI*GYF 76
           A+W S V  SS+G C  R  E  I+QF    I  YF
Sbjct: 280 ATWLSVVKVSSSGGCIDR-EEEWIQQFQARCIKQYF 314


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 5/34 (14%)
 Frame = +2

Query: 8   GTLHSVDQYLNIKLSDISVID-----SEKYPHML 94
           GTL   D Y+NI L D++  D     +EK+  ML
Sbjct: 31  GTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEML 64


>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
          Smf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 78

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 8  GTLHSVDQYLNIKL 49
          GTL SVD Y+N++L
Sbjct: 32 GTLQSVDSYMNLQL 45


>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 400

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 67  NHAYIRKLYIEILIHR 20
           N+AY+RKL+ ++LI +
Sbjct: 266 NYAYLRKLFRDLLIRK 281


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 1   DMWDVAFCGSISQYKAFGY 57
           D WDVAF  S  Q+K   +
Sbjct: 341 DRWDVAFAVSDGQFKQVSF 359


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +2

Query: 8   GTLHSVDQYLNIKLSD----ISVIDSEK 79
           G LH+ D++LN+ L D    +++ D E+
Sbjct: 34  GRLHAYDEHLNMVLGDAEEIVTIFDDEE 61


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 KRLRGSIRTTAG**GRHPASPGCR*KGG 198
           ++LRG +    G  G+H   PG R K G
Sbjct: 9   RKLRGHVSAGHGRIGKHRKHPGGRGKAG 36


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +2

Query: 131 RYVQLPADEVDTQLLQDAARKEATVSTR 214
           +Y+Q+P D     L+    RK +  S +
Sbjct: 345 KYIQMPNDSTQASLMPSYTRKTSNASKK 372


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 115 KRLRGSIRTTAG**GRHPASPGCR*KGG 198
           ++LRG +    G  G+H   PG R K G
Sbjct: 9   RKLRGHVSAGHGRIGKHRKHPGGRGKAG 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,195,128
Number of Sequences: 5004
Number of extensions: 20717
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)