Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25m20
(305 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 134 6e-32
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 134 6e-32
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 134 6e-32
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 134 6e-32
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 134 6e-32
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 134 6e-32
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 134 6e-32
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 134 6e-32
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 134 6e-32
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 134 6e-32
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 134 6e-32
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 134 6e-32
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 37 0.013
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 37 0.013
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 37 0.013
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 37 0.013
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 37 0.013
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 37 0.013
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 37 0.013
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 37 0.013
BT020048-1|AAV38851.1| 270|Homo sapiens Ras association (RalGDS... 27 8.1
BT020047-1|AAV38850.1| 270|Homo sapiens Ras association (RalGDS... 27 8.1
AF132676-1|AAD44175.1| 270|Homo sapiens Ras association (RalGDS... 27 8.1
AF061836-1|AAC16001.1| 270|Homo sapiens putative tumor suppress... 27 8.1
AF040703-1|AAC70910.2| 270|Homo sapiens ras association (RalGDS... 27 8.1
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 134 bits (323), Expect = 6e-32
Identities = 63/66 (95%), Positives = 64/66 (96%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLNIKL+DISV D EKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD
Sbjct: 25 ICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 84
Query: 182 AARKEA 199
AARKEA
Sbjct: 85 AARKEA 90
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 36.7 bits (81), Expect = 0.013
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L S D ++NI L ++ + S + C+IRGS ++Y+++P + +D
Sbjct: 27 GHLVSCDNWMNINLREV-ICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIID 77
>BT020048-1|AAV38851.1| 270|Homo sapiens Ras association
(RalGDS/AF-6) domain family 1 protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 171 SWVSTSSAGSCTYRTTEPLIKQFFT 97
+W ST+S+G C+ ++ ++Q+FT
Sbjct: 12 TWSSTTSSGYCSQEDSDSELEQYFT 36
>BT020047-1|AAV38850.1| 270|Homo sapiens Ras association
(RalGDS/AF-6) domain family 1 protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 171 SWVSTSSAGSCTYRTTEPLIKQFFT 97
+W ST+S+G C+ ++ ++Q+FT
Sbjct: 12 TWSSTTSSGYCSQEDSDSELEQYFT 36
>AF132676-1|AAD44175.1| 270|Homo sapiens Ras association
(RalGDS/AF-6) domain family protein 1C protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 171 SWVSTSSAGSCTYRTTEPLIKQFFT 97
+W ST+S+G C+ ++ ++Q+FT
Sbjct: 12 TWSSTTSSGYCSQEDSDSELEQYFT 36
>AF061836-1|AAC16001.1| 270|Homo sapiens putative tumor suppressor
protein protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 171 SWVSTSSAGSCTYRTTEPLIKQFFT 97
+W ST+S+G C+ ++ ++Q+FT
Sbjct: 12 TWSSTTSSGYCSQEDSDSELEQYFT 36
>AF040703-1|AAC70910.2| 270|Homo sapiens ras association
(RalGDS/AF-6) domain family 1 protein isoform 1C
protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -3
Query: 171 SWVSTSSAGSCTYRTTEPLIKQFFT 97
+W ST+S+G C+ ++ ++Q+FT
Sbjct: 12 TWSSTTSSGYCSQEDSDSELEQYFT 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,328,170
Number of Sequences: 237096
Number of extensions: 642837
Number of successful extensions: 1026
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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