Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25m20
(305 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 118 1e-27
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 36 0.007
Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical pr... 27 2.0
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p... 27 2.6
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr... 27 2.6
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ... 27 2.6
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical... 27 3.4
AC006708-18|AAF60424.2| 450|Caenorhabditis elegans Hypothetical... 27 3.4
AC006708-17|AAK68884.2| 435|Caenorhabditis elegans Hypothetical... 27 3.4
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 26 6.0
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 26 6.0
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 26 6.0
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 25 7.9
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 25 7.9
U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase ... 25 7.9
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 118 bits (283), Expect = 1e-27
Identities = 52/65 (80%), Positives = 61/65 (93%)
Frame = +2
Query: 2 ICGTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQD 181
ICGTLHSVDQYLN+KL+DI+V D E++PHM+SVKNCFIRGSVVRYVQLP+D+VDTQLL D
Sbjct: 25 ICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNCFIRGSVVRYVQLPSDQVDTQLLAD 84
Query: 182 AARKE 196
+ RKE
Sbjct: 85 SCRKE 89
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 35.5 bits (78), Expect = 0.007
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2
Query: 8 GTLHSVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVD 163
G L + D ++NI L D+ + S+ + ++RGS ++Y+++P VD
Sbjct: 28 GHLKACDSWMNIHLVDV-IFTSKDGDKFFKMSEAYVRGSTIKYLRIPETVVD 78
>Z71264-3|CAA95827.1| 325|Caenorhabditis elegans Hypothetical
protein K07G5.4 protein.
Length = 325
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -1
Query: 173 EAGCLPHQPAVVRIE--PRSLL*NNFSLITYEDTFQSQSRLYPKALY*DIDPQ 21
EA P +P++ R E PRS+L N+ S YE+ + L P + DI PQ
Sbjct: 225 EASPPPPRPSITRTESVPRSILKNSSSFAIYEEIY--GDHLTPPPI--DIRPQ 273
>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
T01H8.5d protein.
Length = 1931
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1354 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1397
>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1455 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1498
>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
protein T01H8.5d protein.
Length = 1931
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1354 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1397
>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
T01H8.5c protein.
Length = 1971
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
T01H8.5a protein.
Length = 2032
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1455 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1498
>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
homologous cationchannel protein.
Length = 1971
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +2
Query: 35 LNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDT 166
L+ L+ S+ ++ H + V+N F++ + Y ++ ADE+DT
Sbjct: 1394 LSFGLARQSITYPDETWHWILVRNIFLKPYFMLYGEVYADEIDT 1437
>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
protein Y66D12A.14 protein.
Length = 2870
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 167 GCLPHQPAVVRIEPRSLL*NNFSLITYE--DTFQSQSRLY 54
GCLP+ V ++ R L NF L+ E DT ++LY
Sbjct: 2670 GCLPYHKMVEELKKRFLGKTNFILLDEEFGDTVDEVAKLY 2709
>AC006708-18|AAF60424.2| 450|Caenorhabditis elegans Hypothetical
protein Y110A7A.6a protein.
Length = 450
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 205 NGRLLSSGILEKLGVYLISRQLYVSNHGAS 116
NG + S + + ++L+ R +Y+S HG S
Sbjct: 228 NGHVQSRVVYFLMNIHLLPRSIYLSRHGES 257
>AC006708-17|AAK68884.2| 435|Caenorhabditis elegans Hypothetical
protein Y110A7A.6b protein.
Length = 435
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -2
Query: 205 NGRLLSSGILEKLGVYLISRQLYVSNHGAS 116
NG + S + + ++L+ R +Y+S HG S
Sbjct: 234 NGHVQSRVVYFLMNIHLLPRSIYLSRHGES 263
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 163 VYLISRQLYVSNHGASYKTIFH 98
+Y I+ QLY++NH +K +FH
Sbjct: 387 IYRINYQLYLNNHNMFFK-VFH 407
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/65 (20%), Positives = 28/65 (43%)
Frame = +2
Query: 29 QYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEATVS 208
+YL +K + ++ ++ +K C+ G + Y Q D + + + R A +
Sbjct: 56 KYLRLKCLSVHCGEAARFCKPCRLKRCYEAGMKIEYFQHNRDSIKSSSIAQIPRSFANIV 115
Query: 209 TR*NL 223
R +L
Sbjct: 116 GRPSL 120
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/65 (20%), Positives = 28/65 (43%)
Frame = +2
Query: 29 QYLNIKLSDISVIDSEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEATVS 208
+YL +K + ++ ++ +K C+ G + Y Q D + + + R A +
Sbjct: 41 KYLRLKCLSVHCGEAARFCKPCRLKRCYEAGMKIEYFQHNRDSIKSSSIAQIPRSFANIV 100
Query: 209 TR*NL 223
R +L
Sbjct: 101 GRPSL 105
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +2
Query: 20 SVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIR 118
+V+++ +I L ++S +++ +PH++ K CF++
Sbjct: 68 AVEKWNDI-LKEVSFLNTVVHPHIVDYKACFLK 99
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +2
Query: 20 SVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIR 118
+V+++ +I L ++S +++ +PH++ K CF++
Sbjct: 68 AVEKWNDI-LKEVSFLNTVVHPHIVDYKACFLK 99
>U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase
protein 18, isoformb protein.
Length = 353
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/33 (27%), Positives = 24/33 (72%)
Frame = +2
Query: 20 SVDQYLNIKLSDISVIDSEKYPHMLSVKNCFIR 118
+V+++ +I L ++S +++ +PH++ K CF++
Sbjct: 68 AVEKWNDI-LKEVSFLNTVVHPHIVDYKACFLK 99
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,443,614
Number of Sequences: 27780
Number of extensions: 110692
Number of successful extensions: 251
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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