Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m17
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0630 - 4598804-4599295,4599627-4599965,4600002-4600039,460...    29   3.7  
02_03_0085 + 15063444-15063889,15064324-15065311                       28   6.5  
11_01_0595 + 4732330-4732723,4732839-4732903,4733023-4733143,473...    27   8.6  

>06_01_0630 -
           4598804-4599295,4599627-4599965,4600002-4600039,
           4600145-4600460,4600541-4600794,4601586-4601651,
           4603422-4603617
          Length = 566

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = +1

Query: 301 AQTAVQEHGVHREAWVLIQNGRRSRGPSIVSVHCTGVDARLKRTNPREIR 450
           A T   +  V  EA+ L  NG  SR  +I + H    D RL+RT PR  R
Sbjct: 31  AATTGGDVSVALEAYRLDPNGSGSRTGAITAAHG---DGRLRRTKPRSRR 77


>02_03_0085 + 15063444-15063889,15064324-15065311
          Length = 477

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 552 VFLPPTIIEKSSLSKIRKWSGAVALPTNCS 463
           VF P   IE SS  KI +    + +PT CS
Sbjct: 420 VFAPDATIEVSSPRKIAEMDLVIVMPTGCS 449


>11_01_0595 +
           4732330-4732723,4732839-4732903,4733023-4733143,
           4733596-4733687,4733850-4733915,4734106-4734125,
           4734147-4734239,4734358-4734445,4734570-4734635,
           4734728-4734843,4735410-4735500,4736133-4736234,
           4736342-4736425,4736551-4736643,4736728-4736823,
           4736914-4736999,4737528-4737606,4737675-4737788,
           4737890-4737985,4738060-4738123,4738221-4738510,
           4738901-4738956,4739060-4739177,4739287-4739367,
           4739683-4739762,4740001-4740055,4740142-4740211,
           4740279-4740468,4740567-4740690,4741055-4741129,
           4741217-4741390
          Length = 1112

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +2

Query: 458 NSEQFVGNATAPDHFRILDRDDFSIIVGGRN 550
           N EQ V     P HF I+D  D  +I  GRN
Sbjct: 276 NKEQLVMRWPTPFHFAIVDEVDSVLIDEGRN 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,327,054
Number of Sequences: 37544
Number of extensions: 331329
Number of successful extensions: 820
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)