Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m17
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.       42   3e-04
AL032653-2|CAC70145.1|  264|Caenorhabditis elegans Hypothetical ...    42   3e-04
AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical ...    42   3e-04

>U15667-1|AAA51021.1|  562|Caenorhabditis elegans CeSema protein.
          Length = 562

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 494 DHFRILDRDDFSIIVGGRNTVYNLSLYDLSEN 589
           DHF++L  D  S++VG RN VYNLSL  LS N
Sbjct: 53  DHFKLLAADGDSLLVGARNAVYNLSLSTLSVN 84


>AL032653-2|CAC70145.1|  264|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1b protein.
          Length = 264

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 494 DHFRILDRDDFSIIVGGRNTVYNLSLYDLSEN 589
           DHF++L  D  S++VG RN VYNLSL  LS N
Sbjct: 53  DHFKLLAADGDSLLVGARNAVYNLSLSTLSVN 84


>AL032653-1|CAA21714.1|  712|Caenorhabditis elegans Hypothetical
           protein Y54E5B.1a protein.
          Length = 712

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +2

Query: 494 DHFRILDRDDFSIIVGGRNTVYNLSLYDLSEN 589
           DHF++L  D  S++VG RN VYNLSL  LS N
Sbjct: 53  DHFKLLAADGDSLLVGARNAVYNLSLSTLSVN 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,955,327
Number of Sequences: 27780
Number of extensions: 286800
Number of successful extensions: 652
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)