Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m17
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   6.9  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   9.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   9.2  

>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -3

Query: 263 SSQNDIREHHKNISLNNVFTHNQLLQTLCDTETTSLQI 150
           +S ND +  +KN + N+  +H  L   L  T T ++ +
Sbjct: 106 TSSNDPKNQYKNQNNNHYTSHQHLRTHLRGTLTVNVSV 143


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -2

Query: 534 IIEKSSLSKIRKWSGAVALPTNCSEFSSPYFTWIRAFE 421
           I+  S+L ++ K       P NC++  S + T    FE
Sbjct: 296 IVLTSALQEMNKSKSITEPPKNCADSGSIWETGKNLFE 333


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 233 KNISLNNVFTHNQLLQTLCDT 171
           KN+  NN+ T NQL     DT
Sbjct: 34  KNVYKNNIETKNQLSPFNIDT 54


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 410 WMPDSNARIHVKYGDENSEQ 469
           + PD N R  V  GD++ +Q
Sbjct: 765 FQPDKNIRRKVTMGDKSKKQ 784


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 410 WMPDSNARIHVKYGDENSEQ 469
           + PD N R  V  GD++ +Q
Sbjct: 855 FQPDKNIRRKVTMGDKSKKQ 874


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,733
Number of Sequences: 438
Number of extensions: 3474
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)