Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m13
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.03c |||armadillo repeat protein, unknown biological rol...    26   3.1  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    25   5.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    25   5.5  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        24   9.6  

>SPBC1703.03c |||armadillo repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 104 YYSCIII*FACSLIFNIYPS-FSNKTKE 184
           Y SC++  ++  +I+NIY S F NK  E
Sbjct: 249 YPSCLVRVYSIGIIYNIYQSGFVNKKME 276


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 YILNIKEHANYMMIHE 109
           Y+LNI+ H NY   H+
Sbjct: 429 YLLNIQAHPNYQTFHQ 444


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 289  KICSEHTSLIISKRKFSLIEFFSAEYSEFVVISILFFCFI 170
            +IC   TSL IS    S ++   AE +    +S+LF  F+
Sbjct: 1209 RICLRETSLFISPLMLSTLDMIIAE-NNVNEVSVLFKSFL 1247


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -2

Query: 253 KRKFSLIEFFSAEYSEFVVISILFFCFIAKTWIYI 149
           KR  S++ ++   YS+F+ +  ++   I    IYI
Sbjct: 30  KRILSILPYYKNSYSDFISVLQMYKVHIRMVSIYI 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,832
Number of Sequences: 5004
Number of extensions: 29311
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)