Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m11
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0253 + 2072766-2072954,2073526-2073591,2073755-2073877,207...    60   1e-09
08_01_0255 + 2089543-2089583,2089696-2090089,2090797-2090862,209...    44   8e-05
11_06_0172 - 20877029-20878049,20880129-20880400                       30   1.8  

>08_01_0253 +
           2072766-2072954,2073526-2073591,2073755-2073877,
           2073913-2074017,2074555-2074635,2074715-2074807,
           2075023-2075098,2075182-2075261,2075359-2075430,
           2075553-2075612,2075775-2075871,2076137-2076200,
           2076303-2076362,2076539-2076608
          Length = 411

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 29/68 (42%), Positives = 38/68 (55%)
 Frame = +3

Query: 432 CSAKEDHGQPLFGCQFNHHLGEGEPSVFAVVGSNRVSIYECPESGGFKFLQCYADPDVDE 611
           C+   +  +PL+   FN  L      VFA VG NRV+ Y C + G F  LQ Y D D DE
Sbjct: 30  CNKLTEGKRPLYAIGFNF-LDFHYYEVFATVGGNRVTTYSCLKDGNFAILQAYIDEDKDE 88

Query: 612 TFYTCAWS 635
           +FYT +W+
Sbjct: 89  SFYTLSWA 96


>08_01_0255 +
           2089543-2089583,2089696-2090089,2090797-2090862,
           2091067-2091189,2091605-2091685,2091765-2091857,
           2092103-2092178,2092255-2092334,2092433-2092504,
           2092937-2092996,2093177-2093273,2093498-2093561,
           2093706-2093765,2093942-2094035
          Length = 466

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%)
 Frame = +3

Query: 456 QPLFGCQFNHHLGEGEPSVFAVVGSNRVSIYECPESGGFKFLQCYADPDVDETFYTCAWS 635
           +P++   FN  L      +FA     R+S Y C  +G F  LQ Y D D++E+F+T +W+
Sbjct: 120 RPVYAIVFNF-LDVRYYDIFATACGPRLSTYRCLMNGKFALLQSYLDDDMNESFFTVSWA 178


>11_06_0172 - 20877029-20878049,20880129-20880400
          Length = 430

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 336 TYCLCLKYYQHLKCHQLHFQKNS-CL 262
           TYCLC K Y  LK + ++F  +S CL
Sbjct: 352 TYCLCAKEYPLLKANHIYFTDDSECL 377


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,336,811
Number of Sequences: 37544
Number of extensions: 263610
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)