Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m11
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect...    33   0.17 
AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat ...    33   0.17 
AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm rece...    29   3.7  

>U42438-1|AAN84876.1|  459|Caenorhabditis elegans Maternal effect
           sterile protein 6 protein.
          Length = 459

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 444 EDHGQPLFGCQFNHHLGEGEPSVFAVVGSNRVSIYECP 557
           ED  + ++GC FN + G  E    A VG + + +Y  P
Sbjct: 35  EDQKKAIYGCAFNQYAGIDEEQAVATVGGSFLHMYSVP 72


>AF016224-1|AAC27121.1|  459|Caenorhabditis elegans WD-40 repeat
           protein protein.
          Length = 459

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 444 EDHGQPLFGCQFNHHLGEGEPSVFAVVGSNRVSIYECP 557
           ED  + ++GC FN + G  E    A VG + + +Y  P
Sbjct: 35  EDQKKAIYGCAFNQYAGIDEEQAVATVGGSFLHMYSVP 72


>AF016446-8|AAC24168.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 205 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 190 VLNETFSEINKLYRQLLHYCLRLK*T*IFLKMKLMTLQVLIVLQTQTIRPVVRL 351
           ++N +F  +     Q      +LK + + LK K + +Q+   L TQT+ PV+ L
Sbjct: 208 IINSSFFTVCYFGYQTFRELRKLKYSNVSLKNKTLQVQLYYALVTQTLIPVILL 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,224,581
Number of Sequences: 27780
Number of extensions: 262864
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)