Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25m09
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.26
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 28 1.4
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 1.8
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 3.2
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 4.2
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 26 5.6
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.6
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 26 5.6
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 9.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 9.7
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 9.7
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 30.3 bits (65), Expect = 0.26
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 114 IDSLCFLFSKYFNQSLIVDGKGLTFFTEF 200
I+SLC LF+K+ N + + + +TF T+F
Sbjct: 698 INSLCKLFTKFSNFDYLFEDRTVTFLTDF 726
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 108 DEID--SLCFLFSKYFNQSLIVDGKGLTF 188
DEID SLC L K+F + V G+GL F
Sbjct: 210 DEIDGISLCNLVHKFFVDACTVPGEGLCF 238
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 396 MCQSCKPANKIQCFECKC-RYLASSLSTLDEGLQNGWDIF 512
+C+S +K QC+ C+C R + ++L + W IF
Sbjct: 407 ICRSRSCPSKYQCYSCRCARNSSLEFTSLPGQSSDTWSIF 446
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 26.6 bits (56), Expect = 3.2
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 81 VCFE-AQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTD 257
V FE Q L DE+ + FL + ++ VD T E K + ++ F NQANN D
Sbjct: 132 VSFEQGQALADEL-GVKFLEASA-KTNVNVDEAFFTLAREIKKQKIDAENEFSNQANNVD 189
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 366 PTPAPDVDEIMCQSCKPANKI 428
P P P VD C+SC P+ ++
Sbjct: 582 PVPRPRVDLTQCKSCGPSYRL 602
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 81 VCFEAQLLRDEIDSLCFLFSKYFNQSLIVDGKGLTFFTEFNKCIVSIKSSFENQANNTDN 260
+ F R ++SLCFLF NQ D L F N+ ++++ + +T+N
Sbjct: 341 ITFMGDFKRCVVESLCFLFLLLTNQPRFTD--ELVNFKSSNEMMMNLLFIHVKYSGDTEN 398
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 5.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 391 SSTSGAGVGL*YVCKYCIMVLNWGTCLMNSS 299
S+TSGA L V K +M L G CL+ +S
Sbjct: 537 SATSGAAGDLFSVSKNLMMTLTAGLCLITAS 567
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 5.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 245 QQHRQHTQCKKHFFDIFARRV 307
Q H+ H K HFF IF +++
Sbjct: 339 QHHQCHPLIKTHFFGIFGQKI 359
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +3
Query: 414 PANKIQCFECKCRYLASSLS 473
P I CFE C Y+ +LS
Sbjct: 520 PRRLISCFEAPCSYIIGTLS 539
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = +3
Query: 15 CTMCAYRLQYSLRFNTYDRFENVCFEAQLLRDEI 116
CT C R++ + YD + CF R +I
Sbjct: 78 CTACRMRIKDYALMSGYDSYHRECFRCHDCRKQI 111
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -1
Query: 425 FVCGLARLTHDLVHVGCRRRIVICLQVLHNGPKLGHLFDE 306
F G R T D+V ++ C ++H +G+L+DE
Sbjct: 146 FSSGSGRNTTDIVLFPFVLAVIKCCDIVHREFLMGNLYDE 185
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,186
Number of Sequences: 5004
Number of extensions: 59286
Number of successful extensions: 174
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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