Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m06
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    31   0.70 
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    29   1.6  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    29   1.6  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      29   1.6  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   2.1  
U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 30.7 bits (66), Expect = 0.70
 Identities = 20/70 (28%), Positives = 31/70 (44%)
 Frame = +3

Query: 66   YIWEFNRRMQSVKNINKVKTTAT*ITQFKHGLSSPSSFFNRCHIWFDTPAPFFSRYHTQT 245
            ++ + N R+Q+  N +   T+   I  F   LS+PS+         D P P  S +    
Sbjct: 2593 FLLDLNSRLQTESNSSSTATSGWTINLFPTHLSTPSTMPRSQQKRLDVP-PNNSVHQNSY 2651

Query: 246  QKLGLQTPPG 275
             KLG  + PG
Sbjct: 2652 MKLGYSSDPG 2661


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
           protein B0222.9 protein.
          Length = 1217

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 328 FGGLSMNGSWIFCMCEVYPGGVCNPSF 248
           FGG   N SWI CMC +    +  P++
Sbjct: 708 FGGKVNNASWIACMCAIVAKKLNRPTY 734


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 282 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 440
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 282 SHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKERSDFVACPRLAFDCYKI 440
           SH+QK+Q P   KPP+   T  L+ R+       K+ +D+    R   D Y I
Sbjct: 38  SHVQKLQ-PVYYKPPQNLETFELSLRNHFEEKTNKKFADYREFHRFTCDNYGI 89


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 328 FGGLSMNGSWIFCMCEVYPGGVCNPSFCV 242
           FGG   N SWI C+C V    +  P++ V
Sbjct: 740 FGGKLNNASWIACICSVVAKKLNRPTYGV 768


>U88173-6|AAM15575.1| 1282|Caenorhabditis elegans Hypothetical
           protein F46F11.9b protein.
          Length = 1282

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 363 STHPTVAKERSDFVACPRLAFDCYKIVSARF 455
           S H  +A  R    A P L+FDCY++    F
Sbjct: 516 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 546


>U88173-5|AAM15574.1| 1280|Caenorhabditis elegans Hypothetical
           protein F46F11.9a protein.
          Length = 1280

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 363 STHPTVAKERSDFVACPRLAFDCYKIVSARF 455
           S H  +A  R    A P L+FDCY++    F
Sbjct: 514 SFHRVLAANRFSNAAIPALSFDCYRLALPAF 544


>U42436-9|AAF99893.1|  109|Caenorhabditis elegans Hypothetical
           protein C49H3.3 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 278 DLAHTEDPGAVH*QAAEVTEHATINSQTFHTSDSS 382
           D   T+  G  + +  EVT  ATIN++T    D S
Sbjct: 43  DAEKTKTDGTANEEKMEVTSQATINTKTLKKKDGS 77


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
 Frame = -1

Query: 349 NSSVFCNFGGLSMNGSWIFCMCEVYPGGVCN---PS-----FCVCV*YRLKNGAGVSNHM 194
           + SVF +   LS+    +F    ++  G C    PS     F + +  R+K G   SN +
Sbjct: 154 DGSVFLDISPLSLANDCLFLKTSIFFSGSCFKILPSILMSMFSIIILIRIKAGKQRSNSL 213

Query: 193 WHRLKNDDGDDKPCLNCVIYVAVVFTL 113
            H   + D         +  V VVF +
Sbjct: 214 SHNQTDQDAQIDRSTRFIQVVVVVFVI 240


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,393,818
Number of Sequences: 27780
Number of extensions: 235729
Number of successful extensions: 658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)