Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m03
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   1.8  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   3.2  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   5.6  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    25   7.5  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    25   7.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.5  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    25   9.9  

>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +2

Query: 491 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKIS 652
           F S+++ K KISLY++K        D  L +    +R +  ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +2

Query: 566 DGVLHYYDSEIREVVKLQEST 628
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 574 DSIISITMWNFLDII**YFGLILGHTIKSTFKDVVVFCVNL*QFSFCVEVVHFECD 407
           D I  I + NF+ +I  +FG  +  + + +F ++++ CV +       EV H   D
Sbjct: 371 DGIDKIDVQNFILLILKFFGFAISASDRRSFLNLIMSCVMVSIQQSSAEVGHSTSD 426


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 52  RRQIVNFENCNLYFS 96
           +R +   ENCNLYF+
Sbjct: 376 QRNVTTMENCNLYFN 390


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 212 EGKYWHDYNYHAVFYYRSKHLKIWQLICAP 123
           E +YW   ++  +   R  H ++W L   P
Sbjct: 641 EVRYWDGKSFDLILKLRGHHSEVWALAVGP 670


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 218 HEEGKYWHDYNYHAVFYYRSKHLK 147
           + EGK++   +YH  F  R KH K
Sbjct: 299 YREGKFYCHLDYHEQFSPRCKHCK 322


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 18  PMTDQEIQKEIETANRKF*EL*SLFQFHFCFIMIEGRANELPDFQVFRTVIKYCMVII 191
           PM + +  K I     K  +   L QF F  I  +    E+PDF + R   ++  V++
Sbjct: 551 PMANVDTDKIIPKQFLKTIKRTGLGQFAFYEIRYDADGKEIPDFVLNREPYRHATVLV 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,953
Number of Sequences: 5004
Number of extensions: 52736
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)