Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m03
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32683-14|CAN86606.1|  102|Caenorhabditis elegans Hypothetical p...    33   0.18 
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr...    31   0.56 
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p...    31   0.56 
AL117207-12|CAD88220.1|  324|Caenorhabditis elegans Hypothetical...    31   0.98 
U39648-8|AAK39291.1|  270|Caenorhabditis elegans Beta carbonic a...    27   9.1  
U39648-7|AAM15604.1|  429|Caenorhabditis elegans Beta carbonic a...    27   9.1  
AC024783-3|AAL32245.1|  273|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z32683-14|CAN86606.1|  102|Caenorhabditis elegans Hypothetical
           protein R07E5.10b protein.
          Length = 102

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 159 RTVIKYCMVIIIVPVLSFFVAKSILFDGVLRLDPINXXXXXXXXXXXXXXXXXXXYIFKA 338
           + ++ Y +VI+IVP+ S F+ K   F+G+L +   +                   ++F A
Sbjct: 29  KNLLTYSLVILIVPLASMFLLKQFFFEGLLGVSANDALTYSAIIAVVLVHVVLGIWLFAA 88

Query: 339 YSETEKDPKPVKKD 380
             + ++  +  K+D
Sbjct: 89  TKQEDRKKRENKQD 102


>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
            C38D9.5 protein.
          Length = 1213

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 441  ENCYKFTQKTTTSLKVDFI-VWPKIRPKYHYMMSRKFHMVMLMMESFITMILK*EKW*NS 617
            +N + +  ++   ++++F  VW +  PK+ +M + KF   +L  +     +LK EK+  +
Sbjct: 1109 KNIFLYRPRSWDQVRLNFKQVWLE-NPKFFFMSTDKFTHFLLGFKITTENVLKYEKYGKN 1167

Query: 618  RSLLKRK 638
            RS LK K
Sbjct: 1168 RSALKNK 1174


>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
            protein C38D9.5 protein.
          Length = 1213

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 441  ENCYKFTQKTTTSLKVDFI-VWPKIRPKYHYMMSRKFHMVMLMMESFITMILK*EKW*NS 617
            +N + +  ++   ++++F  VW +  PK+ +M + KF   +L  +     +LK EK+  +
Sbjct: 1109 KNIFLYRPRSWDQVRLNFKQVWLE-NPKFFFMSTDKFTHFLLGFKITTENVLKYEKYGKN 1167

Query: 618  RSLLKRK 638
            RS LK K
Sbjct: 1168 RSALKNK 1174


>AL117207-12|CAD88220.1|  324|Caenorhabditis elegans Hypothetical
           protein Y60A3A.22 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +3

Query: 393 HYCFISHSKWTTSTQKENCYKFTQK-TTTSLKVDFIVWPKIRPKYHYMMSRKFHMVMLMM 569
           HYC I+   W     +     F +K  T ++ +D  V PK  P + Y+M+  F  +  + 
Sbjct: 92  HYCLINVGVWAYLEMESLLLCFFKKHQTIAVIIDVHVIPKFIPYFCYLMAIVFPAIPCVG 151

Query: 570 ESFITM 587
             F+T+
Sbjct: 152 LDFLTV 157


>U39648-8|AAK39291.1|  270|Caenorhabditis elegans Beta carbonic
           anhydrase protein1, isoform a protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 431 YTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEI 547
           Y +   L +H   +D+++G  Y  ++DK +  + D K +
Sbjct: 205 YLESGRLHIHGMWFDIYKGEDYLFSKDKKRFVVIDEKTV 243


>U39648-7|AAM15604.1|  429|Caenorhabditis elegans Beta carbonic
           anhydrase protein1, isoform b protein.
          Length = 429

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +2

Query: 431 YTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEI 547
           Y +   L +H   +D+++G  Y  ++DK +  + D K +
Sbjct: 364 YLESGRLHIHGMWFDIYKGEDYLFSKDKKRFVVIDEKTV 402


>AC024783-3|AAL32245.1|  273|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.1a protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 19/77 (24%), Positives = 34/77 (44%)
 Frame = +2

Query: 428 LYTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREV 607
           L  +G +  VH  NYD  +G     +      S  D    P GD ++ ++     E  ++
Sbjct: 55  LQHQGFVNPVHEYNYDATDGPNMYPSDHHGMHS--DSASPPSGDFDEEIVEDEGREKEQL 112

Query: 608 VKLQESTEKKVLKISQT 658
             + EST+  ++ + QT
Sbjct: 113 DNIVESTQHSIIAVGQT 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,468,378
Number of Sequences: 27780
Number of extensions: 288467
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)