Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m02
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0012 + 71903-72935,73468-73981,74619-76008                       31   0.76 
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    30   1.8  
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766     29   4.1  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    28   5.4  
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    28   7.1  
12_02_1061 - 25756366-25757567,25758692-25758797                       27   9.4  

>01_01_0012 + 71903-72935,73468-73981,74619-76008
          Length = 978

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +2

Query: 344 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDSTLTT 523
           D+ L  +  +   D   +  E   E  + +DR D L SVG K    +L    +E     T
Sbjct: 735 DEMLNSNSKRSKHDAALECHERKDEDHIEEDRRD-LDSVGSKSEKRSLGNGDHEKQNHDT 793

Query: 524 NRRLD 538
           NR+ D
Sbjct: 794 NRKTD 798


>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 206 PMPCIQVFFPPLIAPFSIDCNASIY 132
           P PC  V   P + PFS+ C  + Y
Sbjct: 471 PFPCCHVIVYPFLVPFSLQCEVTNY 495


>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
          Length = 943

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
 Frame = +2

Query: 152 QLKMELSAEGKTPEYMAL----AGIKFKLSLPEF--KDNIQLKEQLLNGIKAGHMAPYYK 313
           Q ++E  AE  T     L    +G++ +L   E   K+++   EQLL+G+K         
Sbjct: 223 QSELETKAEEATAIVAKLESEASGLRAELQNAEASRKEDVGRAEQLLHGLKVDIAYAKRA 282

Query: 314 EVCNDLG---W-----AFDQKLYD--DMTKENQDRLSKFEEDDSETP-VWQDRLDYLCSV 460
           E   +L    W     +   +L++   + K N+D L        E   + Q     +  +
Sbjct: 283 EADANLAAQEWKTKAESLQARLHELSSLNKSNEDSLQSLTSSFDECKSMLQHEQSQVVQL 342

Query: 461 GDKETATALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELV 628
            +K ++      +Y++  L TNRRLD               +    K +N+AH+ V
Sbjct: 343 KEKVSSLEKEAREYKECFLETNRRLDVATKESHQLQATIDRLTSQHKLLNEAHQQV 398


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +2

Query: 335 WAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGD 466
           W  D++  DD+ +E  +R+ + E +++E  V Q+++  L +VG+
Sbjct: 388 WDGDEE--DDVLEEVYERVEREEMEENEAGVQQEKIVQLANVGE 429


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 344 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 508
           + K Y+++ +E ++   +FE+DD E     D  D   S  D E    +  S+ E+
Sbjct: 162 NNKQYENLIQECREHPERFEDDDVEDKDDDDETDDDASDADIEDPEKMVMSESEE 216


>12_02_1061 - 25756366-25757567,25758692-25758797
          Length = 435

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 525 TGGSMLYLLCLELLISMDVM*RKWEKLSIRLT 620
           T GS+ +LLCL L +   +  R+W + + +LT
Sbjct: 48  TAGSVAFLLCLALSVWCLLRRRQWRRNNAKLT 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,052
Number of Sequences: 37544
Number of extensions: 266104
Number of successful extensions: 675
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)