Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25m02
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...    62   4e-10
AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical ...    29   2.8  
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 12/157 (7%)
 Frame = +2

Query: 197 MALAGIKFKLSLPEFKDNIQLK--EQLLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMT 370
           + L+  +F L+ PE   +++    E+L   IK   MAP+Y+ VC D     D      M 
Sbjct: 29  LELSQTRFMLNHPEVDSSVKEAKLEKLQETIKEFDMAPFYELVCADFKIVVDATQLAAMK 88

Query: 371 KENQDRLSKF--EEDDSETPVWQD--------RLDYLCSVGDKETATALATSKYEDSTLT 520
             NQ ++ +   E +D+E  + +         + +Y C +GDK+ A    T+ YE  T+ 
Sbjct: 89  AANQKKIDEITAEVEDAEKNLGESEVRQGLLRKFEYYCQIGDKDNALKAYTATYE-KTVG 147

Query: 521 TNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVD 631
              R+D +FA+ R+  F   +   + K I KA EL++
Sbjct: 148 MGYRIDVVFAMIRVGLFF-LDHHLINKFITKAKELME 183


>AF003150-4|AAB54217.1|  381|Caenorhabditis elegans Hypothetical
           protein T05E7.5 protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 359 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATS-KYEDSTLTTNRRL 535
           ++  K   + LSK+EE   E   +  +   LC+   +E  ++  TS K ++   +  +RL
Sbjct: 299 EETKKMKSEALSKYEESQKEFEQFNLKFQRLCTKFYEERVSSQTTSPKMKEHLASAKKRL 358

Query: 536 DAI 544
            AI
Sbjct: 359 SAI 361


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 344 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATA 484
           DQK YD + KEN+    + EE + +    ++RL+ L    + E   A
Sbjct: 754 DQKRYDMLKKENETLQIQIEEKERKIHECKERLEELTKNSETEDMNA 800


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -3

Query: 154 LIVMLLFINVIKVCLEVNFQQIISLLTEQTKNKIKMHSTSAHKIQVTGTDY 2
           L V+ + INVI++ LE  F QI+  +    KN + + +  + K  +  +++
Sbjct: 289 LSVVSMCINVIQMQLEFIFNQIVQRIENDFKNTLSVAAEESRKKSIGVSEF 339


>Z81510-3|CAB04163.1|  311|Caenorhabditis elegans Hypothetical
           protein F21D9.4 protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 233 PEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEED 409
           P + +N+ + EQLL GI+   + P ++     + W      Y ++ K+ +  L KF  D
Sbjct: 223 PFYAENVHVAEQLLAGIRGMGIIPNFQNFEKIIFW------YPEVNKDVERLLQKFAPD 275


>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
 Frame = +2

Query: 269 LLNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDR---LSKFEEDDSETPVWQDR 439
           + +G +  +M P +K +C  L   +D  L   +     DR   L  FE D+S      D 
Sbjct: 281 MAHGRRTIYMFPEFK-ICRSLVICYDIGLIAPVFSHENDRFDDLMHFEVDESHVLYKADL 339

Query: 440 LDYLCSVGD-KETATALATSKYED-STLTTNRRLDAIFALFR 559
           L+YL S  + +E    + ++ Y   S  T     +  FA FR
Sbjct: 340 LEYLKSAHELREVRVVIPSTFYSRVSRCTEGCFSNPDFACFR 381


>Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical
           protein M18.6 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 332 GWAFDQKLYDDMTKENQDRLSKFEEDDSE 418
           G  F  +L +  T+EN D + +F+ DD E
Sbjct: 371 GITFQNELQEGDTEENWDHVPEFDNDDQE 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,795
Number of Sequences: 27780
Number of extensions: 255379
Number of successful extensions: 768
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)