Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l21
         (206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    23   4.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    23   7.3  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    22   9.6  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    22   9.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    22   9.6  

>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 136 AVRSHGYLSLPTARQYKCF 192
           A+ + G+L+LP+   Y CF
Sbjct: 217 AIHTKGFLNLPSGVWYLCF 235


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 128 TRRQCALTAICPCRRPVN 181
           T R+CAL A   CR+ +N
Sbjct: 375 TIRECALAAAGECRQQLN 392


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 198 FFKTFILTGRRQGQIAVRAHCRR 130
           F   FI T + QG+  V  HC+R
Sbjct: 215 FQSLFIQTPQIQGRQVVTIHCQR 237


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 93   HYDYTYRTLIGIITAVVTLVKNVM 22
            H D + RTLI  I    TLV  V+
Sbjct: 968  HRDLSLRTLIRTINPAATLVGEVV 991


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 144 AHCRRVNHSKQCN**CNH 91
           A CRR   +K C+  C H
Sbjct: 496 AKCRRCRRTKYCSKECQH 513


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,416
Number of Sequences: 5004
Number of extensions: 6768
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)