Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l21
         (206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.7  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    19   8.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   8.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   8.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 127  HAPAVRSHGYLSLPTARQ 180
            HAP   S G +S+P  +Q
Sbjct: 1267 HAPPAYSCGTVSVPQQQQ 1284


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 436 CLIVFTLFTVLATIVILCRAP 456


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 504 CLIVFTLFTVLATIVILCRAP 524


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +2

Query: 113 CLL*FTRRQCALTAICPCRRP 175
           CL+ FT      T +  CR P
Sbjct: 504 CLIVFTLFTVLATIVILCRAP 524


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 48  VVTLVKNVMLKHNNT 4
           +   V  V LKHN+T
Sbjct: 670 ITLFVCGVFLKHNDT 684


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,471
Number of Sequences: 438
Number of extensions: 481
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)