Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l12
         (181 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    24   2.3  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    23   5.3  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    23   7.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    22   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    22   9.3  

>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 176 FLGFHNTFYLILREHFEHVLLLMAAS 99
           F+ FH    L+L   F H+L+L+  S
Sbjct: 88  FISFHTIVVLLLLPPFSHLLVLVYPS 113


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 77  YIRPFHTSCVQNLSLVQK 24
           YI+ FH   V N+ L+ K
Sbjct: 242 YIKNFHNESVNNVDLINK 259


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein
          ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 72 PSLSHIMRSESFTRSEMFYNN 10
          P+L +++ SES T S +F  N
Sbjct: 10 PNLPNLIHSESITNSPVFIPN 30


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 161 NTFYLILREHFEHVLLLMAASCER 90
           +TF L + EH+E +L     SC++
Sbjct: 335 STFTLSVSEHWEDLLRKATDSCQK 358


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = -2

Query: 69   SLSHIMRSESFTRSEMFYNN 10
            ++SH++ +ES   S +F+N+
Sbjct: 1606 AISHLVENESILESMVFWND 1625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,027
Number of Sequences: 5004
Number of extensions: 7140
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)