Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l12
         (181 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    25   6.5  
03_02_0829 - 11599665-11600364,11600853-11601076,11601786-116020...    25   8.6  
03_01_0111 + 884501-884970,885069-885147,885530-885574,885838-88...    25   8.6  

>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 164 HNTFYLILREHFEHVLLLMAA 102
           H TFY +LR   E+V+L++ A
Sbjct: 178 HGTFYYVLRYEAEYVVLVIDA 198


>03_02_0829 -
           11599665-11600364,11600853-11601076,11601786-11602000,
           11602300-11602377,11602593-11603907
          Length = 843

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 126 TRLTPNGGVVRESELELHPSLSHIMRSESFT 34
           T  TP    +R+    L PS+SH   S+SF+
Sbjct: 70  TSATPEPPTIRQKSRNLSPSISH-QASDSFS 99


>03_01_0111 +
           884501-884970,885069-885147,885530-885574,885838-885903,
           886362-886420,886626-886701,886825-886956,887046-887153,
           887679-887733,887822-888042
          Length = 436

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 105 GVVRESELELHPSLSHIMRSESFTRSE 25
           G+ R     LHPS+SH++ S     SE
Sbjct: 12  GLSRHLSRRLHPSVSHLLPSHHDDHSE 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,619,603
Number of Sequences: 37544
Number of extensions: 41713
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)