Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l12
         (181 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    20   2.4  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   5.5  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    19   5.5  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               19   7.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    18   9.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    18   9.6  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 152 KKYCETLK 175
           KKYCET K
Sbjct: 64  KKYCETYK 71


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = -3

Query: 140 REHFEHVLL 114
           +EH+ H+LL
Sbjct: 5   KEHYRHILL 13


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 98  CERAN*SYIRPFHTSCVQNLSLVQK 24
           CE+    Y   FHT    + SL  +
Sbjct: 783 CEKGKEYYAASFHTDIGNSQSLAHQ 807


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = -3

Query: 74  IRPFHTSCVQNLSLVQKCFT 15
           IR     CV N     KC T
Sbjct: 94  IRKIIRQCVDNAKNEDKCLT 113


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 56  SCVQNLSLVQKCFT 15
           SCV ++  V KC T
Sbjct: 158 SCVPSVKHVAKCAT 171


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 6/22 (27%), Positives = 13/22 (59%)
 Frame = -2

Query: 75  HPSLSHIMRSESFTRSEMFYNN 10
           HPS+++++       +  FYN+
Sbjct: 210 HPSVAYLLVGSLKGIARQFYND 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,657
Number of Sequences: 438
Number of extensions: 468
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 39
effective length of database: 129,261
effective search space used:  2585220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)