Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25l11
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein L23|Schizosac... 208 3e-55
SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein L23|Schizosacc... 208 3e-55
SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit L38|... 46 4e-06
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 30 0.20
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 28 0.83
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 27 1.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 27 1.9
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 3.3
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.8
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.7
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 7.7
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 7.7
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 25 7.7
>SPCC1322.11 |rpl2302|rpl23-2|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 208 bits (508), Expect = 3e-55
Identities = 92/127 (72%), Positives = 113/127 (88%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATV KGKP+L
Sbjct: 12 KYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKK+MPA+V+RQRK + R+DGV++YFEDNAGVIVN KGEM GSAITGPVAKECADLWPRI
Sbjct: 72 RKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRI 131
Query: 429 ASXASSI 449
AS A ++
Sbjct: 132 ASNAGTV 138
>SPAC3G9.03 |rpl2301|rpl23-1|60S ribosomal protein
L23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 208 bits (508), Expect = 3e-55
Identities = 92/127 (72%), Positives = 113/127 (88%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
K+R++LGLPV A++NCADN+GAKNLY+++V G RLNRLPAA GDM++ATV KGKP+L
Sbjct: 12 KYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKK+MPA+V+RQRK + R+DGV++YFEDNAGVIVN KGEM GSAITGPVAKECADLWPRI
Sbjct: 72 RKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRI 131
Query: 429 ASXASSI 449
AS A ++
Sbjct: 132 ASNAGTV 138
>SPBC887.07 |mrpl38||mitochondrial ribosomal protein subunit
L38|Schizosaccharomyces pombe|chr 2|||Manual
Length = 126
Score = 45.6 bits (103), Expect = 4e-06
Identities = 22/62 (35%), Positives = 35/62 (56%)
Frame = +3
Query: 219 ATVTKGKPELRKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVA 398
++VT R + A+++R + P R DG ++ F+DNA V+VN + E G+ I VA
Sbjct: 48 SSVTAANKVKRGDIHHAIIVRTKSPVRRPDGRYVRFDDNACVLVNKECEPLGTRILSVVA 107
Query: 399 KE 404
E
Sbjct: 108 NE 109
>SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 886
Score = 29.9 bits (64), Expect = 0.20
Identities = 23/87 (26%), Positives = 37/87 (42%)
Frame = -3
Query: 346 MTPALSSKYINTPSRLXNGFRCLMTTAGITFFRSSGLPFVTVATIMSPEPAAGSLFRRPX 167
+ ALSS+Y S L +T +T SS T +++ +P P + R P
Sbjct: 777 LAKALSSEYTFQKSVLAGLSAATRSTKDLTILLSSSARHYTESSLATPVPLMSPIARVPA 836
Query: 166 IPWTAITYRFFAPVLSAQLITAPTGRP 86
P +A A +++ LI +P P
Sbjct: 837 TPLSA-ALGSAAQSITSPLIMSPAAIP 862
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.9 bits (59), Expect = 0.83
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLL-TMTPALSSKYINTPSRLXNGF 287
R HK AH+ AEP ++P++ + P+++ +TPS L F
Sbjct: 60 RRHKDAHAYDMSLTDAEPALAPVMSPAIPPSMNYPTPSTPSVLPESF 106
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 27.1 bits (57), Expect = 1.4
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLLTMTPALSSKYINTPSRLXNGFRCLMTTAGITFFRS 245
+ K LAT E + T ++SSKY+ +P R + FFR
Sbjct: 766 KSQKQKTELATFTTYKEDDTTTTTRTSIDSISSKYLESPVDSQKVNR-TPNLQSVPFFRQ 824
Query: 244 SGLP--FVTVATIMSPEPAAGSLFRRPXIPWTAI 149
P FV ++PE GS + + W A+
Sbjct: 825 PDAPKRFVGTPDYLAPETLRGST-QDDMVDWWAL 857
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 26.6 bits (56), Expect = 1.9
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +3
Query: 213 IVATVTKGKPELRKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGV 344
IV +KGK L + P++ I R G +Y ED GV
Sbjct: 309 IVVLSSKGKVSLESPMSPSLPIEGTFRSFRVHGATLYLEDTDGV 352
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 3.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -3
Query: 376 EPFISPLLLTMTPALSSKYINTPS 305
+P+ P+L + P L Y++ PS
Sbjct: 275 QPYSGPILASTAPTLDGSYLSNPS 298
>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 214
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = +3
Query: 264 PAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAI 383
P+ I +KP D V + +D+ + N+K ++ A+
Sbjct: 171 PSYSINYKKPVPAGDWVIVRVKDDVARLYNSKSQLLAEAL 210
>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 24.6 bits (51), Expect = 7.7
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -2
Query: 347 YDTRIVLKVYKYSITPXERFPLPDDHCRHYLFPEFRFTLCDCGHNHVPRTGRRQSV 180
Y+TR + K + E PLP LF E F C + + G QS+
Sbjct: 11 YNTRNMEKESSKDLVQNEDTPLPVQKISMSLFHEIVFVFIACTAQLMTQAGLGQSI 66
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 335 IVLKVYKYSITPXERFPLPDDHCRHYLFPEFR 240
+V +++++ E FPLP LFP R
Sbjct: 438 LVSEIFRHPTHTDEDFPLPSPSLSSLLFPTLR 469
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/51 (27%), Positives = 18/51 (35%)
Frame = +2
Query: 83 PGSPSGSSNQLRRQHRGKESVCDRCPRYXRSPEQTAGGRFWGHDCGHSHKG 235
PG P S R + VC RC + + W CGH + G
Sbjct: 170 PGPPK--SGFTRSFNNDTLMVCPRCQEPLGTSKSKEKSALWATKCGHVYCG 218
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 24.6 bits (51), Expect = 7.7
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 231 KGKPELRKKVMPAVVIRQRK---PFXRRDGVFIYFEDNA 338
KG P RK P+++ PF RD +FI E NA
Sbjct: 338 KGAPVFRKH-FPSILQELNSLDPPFYERDAIFIVDEGNA 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,865,119
Number of Sequences: 5004
Number of extensions: 36152
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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