Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25l11
(471 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 233 2e-61
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 233 2e-61
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 233 2e-61
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 233 2e-61
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 233 2e-61
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 233 2e-61
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 233 2e-61
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 233 2e-61
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 119 6e-27
EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase su... 30 4.6
AL929472-9|CAH70084.1| 159|Homo sapiens chromosome 1 open readi... 30 4.6
AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1... 29 6.1
AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein pr... 29 6.1
AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein pr... 29 6.1
AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein. 29 6.1
BC010571-1|AAH10571.1| 911|Homo sapiens brevican protein. 29 8.1
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 233 bits (571), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVRPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 7 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 66
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 67 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 126
Query: 429 ASXASSI 449
AS A SI
Sbjct: 127 ASNAGSI 133
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 233 bits (570), Expect = 2e-61
Identities = 110/127 (86%), Positives = 118/127 (92%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV PAVVIRQRK + R+DGVF+YFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
AS A SI
Sbjct: 133 ASNAGSI 139
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 119 bits (286), Expect = 6e-27
Identities = 55/63 (87%), Positives = 60/63 (95%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAVINCADNTGAKNLY+I+V+GI GRLNRLPAAG GDM++ATV KGKPEL
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 249 RKK 257
RKK
Sbjct: 73 RKK 75
>EF657252-3|ABR93246.1| 513|Homo sapiens cytochrome c oxidase
subunit I protein.
Length = 513
Score = 29.9 bits (64), Expect = 4.6
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Frame = -3
Query: 223 VATIMSPEPAAGSLFRRPXIPW----TAITYRFFAPVLSAQLITAPTGRPREIRNFAPAE 56
+ TI++ +P A + ++ P W TA+ + PVL+A + T R F PA
Sbjct: 165 ITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLYLPVLAAGITMLLTDRNLNTTFFDPAG 224
Query: 55 PPRPLL 38
P+L
Sbjct: 225 GGDPIL 230
>AL929472-9|CAH70084.1| 159|Homo sapiens chromosome 1 open reading
frame 122 protein.
Length = 159
Score = 29.9 bits (64), Expect = 4.6
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +2
Query: 86 GSPSG-SSNQLRRQHRGKESVCDRCPRYXRSPEQTAGGRFWGHDCGHSH 229
G PSG R G + + R R P TAG R WG GH H
Sbjct: 13 GGPSGREEGAWPRASAGPDRLSLALSRAGRLPAWTAGRRGWGSAGGHPH 61
>AY172136-1|AAO31738.1| 1906|Homo sapiens retinoic acid induced 1
protein.
Length = 1906
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLLTMTP 338
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1450 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1477
>AL834486-1|CAD39144.1| 568|Homo sapiens hypothetical protein
protein.
Length = 568
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLLTMTP 338
+G AH L+ GP+ P++ P LL +TP
Sbjct: 112 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 139
>AL834468-1|CAD39127.1| 1285|Homo sapiens hypothetical protein
protein.
Length = 1285
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLLTMTP 338
+G AH L+ GP+ P++ P LL +TP
Sbjct: 829 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 856
>AB058723-1|BAB47449.1| 1644|Homo sapiens KIAA1820 protein protein.
Length = 1644
Score = 29.5 bits (63), Expect = 6.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 424 RGHKSAHSLATGPVMAEPFISPLLLTMTP 338
+G AH L+ GP+ P++ P LL +TP
Sbjct: 1454 KGRAGAHGLSKGPLEKRPYLGPALL-LTP 1481
>BC010571-1|AAH10571.1| 911|Homo sapiens brevican protein.
Length = 911
Score = 29.1 bits (62), Expect = 8.1
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 1/125 (0%)
Frame = -3
Query: 373 PFISPLLLTMTPALSSKYINTPSRLXNGFRCLMT-TAGITFFRSSGLPFVTVATIMSPEP 197
P ++ L+L PA + + S FR + A + L + P P
Sbjct: 7 PLLAALVLAQAPAALADVLEGDSSEDRAFRVRIAGDAPLQGVLGGALTIPCHVHYLRPPP 66
Query: 196 AAGSLFRRPXIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDILLYQN 17
+ ++ P + WT ++ A VL A+ + R P P L D+ L N
Sbjct: 67 SRRAVLGSPRVKWTFLSRGREAEVLVARGVRVKVNEAYRFRVALPTY-PASLTDVSLALN 125
Query: 16 FERNN 2
R N
Sbjct: 126 ELRPN 130
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,962,226
Number of Sequences: 237096
Number of extensions: 1469582
Number of successful extensions: 3436
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3431
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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