Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25l11
(471 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal prot... 221 2e-58
AL032624-3|CAL36506.1| 232|Caenorhabditis elegans Hypothetical ... 33 0.10
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 32 0.24
Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 28 2.9
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 2.9
AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical... 28 2.9
Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical pr... 27 9.0
U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical pr... 27 9.0
>U32305-14|AAK18857.1| 140|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 23 protein.
Length = 140
Score = 221 bits (541), Expect = 2e-58
Identities = 105/127 (82%), Positives = 113/127 (88%)
Frame = +3
Query: 69 KFRISLGLPVGAVINCADNTGAKNLYVIAVQGIXGRLNRLPAAGSGDMIVATVTKGKPEL 248
KFRISLGLPVGAV+NCADNTGAKNL+VI+V GI GRLNRLP+AG GDM V +V KGKPEL
Sbjct: 13 KFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPEL 72
Query: 249 RKKVMPAVVIRQRKPFXRRDGVFIYFEDNAGVIVNNKGEMXGSAITGPVAKECADLWPRI 428
RKKV+ VVIRQRK F R+DG FIYFEDNAGVIVNNKGEM GSAITGPVAKECADLWPRI
Sbjct: 73 RKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 429 ASXASSI 449
A+ A SI
Sbjct: 133 AANAGSI 139
>AL032624-3|CAL36506.1| 232|Caenorhabditis elegans Hypothetical
protein Y49A10A.2 protein.
Length = 232
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 92 PSGSSNQLRRQHRGKESVCDRCPRYXRSPEQTAGGRFWGHDCGHS 226
P G+ L R +R K+S ++ + + ++T GG+ WG CG +
Sbjct: 47 PQGAIFALHRDYRFKKST-EQHTKAIKEAKETLGGKLWGSQCGRA 90
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 31.9 bits (69), Expect = 0.24
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = -3
Query: 238 LPFV-TVATIMSPEPAAGSLFRRPXIPWTAITYRFFAPVLSAQLITAPTGRPREIRNFAP 62
+PFV T + P A ++ R P P+ T AP + PT PR I P
Sbjct: 131 IPFVQTTPATFATLPPAPAVTRAPIQPFVPQTVATIAPSFVRPQV--PTAPPRVIAPQQP 188
Query: 61 AEPPRPLLDILLYQNFE 11
+P RP+ I Q F+
Sbjct: 189 QQPFRPIQPIQPQQPFQ 205
>Z82051-6|CAB04821.1| 354|Caenorhabditis elegans Hypothetical
protein T23D5.9 protein.
Length = 354
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 350 DYDTRIVLKVYKYSITPXERFPL 282
DY + V K+Y YSIT RFP+
Sbjct: 162 DYMSEPVQKMYNYSITSLPRFPI 184
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 228 TKGKPELRKKVMPAVVIRQRKPFXRRDGVFIYFEDN 335
T G ELR ++ + ++ R PF +DGV ++N
Sbjct: 633 TPGLLELRSTILRSFILLLRTPFVPKDGVLNVIDEN 668
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -2
Query: 230 CDCGHNHVPRTGRRQSVQATXDTLDSDH--IQILCPCVVGA 114
C CG N V R R V D LD++H + I CP GA
Sbjct: 88 CRCGENKVERATRDGHV--CLDVLDANHNTLAITCPLPEGA 126
>AL161712-21|CAC70129.2| 729|Caenorhabditis elegans Hypothetical
protein Y66D12A.5 protein.
Length = 729
Score = 28.3 bits (60), Expect = 2.9
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Frame = +3
Query: 84 LGLPVGAVINC-ADNTGAKNLYVIAVQG---IXGRLNRLPAAGSGDMIVATVTKGKPELR 251
L L G V C +D KN + + G + G+LNR M+ +T K +L
Sbjct: 453 LNLSPGTVRKCYSDWLNRKNAEIQSGSGEIRVSGQLNRANPDEYLHMLNSTFLKNFEKLS 512
Query: 252 KKVM-PAVVIRQRKPFXRRDGVFIYFEDN 335
V P +RK +RD F Y+ED+
Sbjct: 513 NLVQEPPRRSLKRKRVSQRDANFYYYEDD 541
>Z69787-1|CAA93642.1| 300|Caenorhabditis elegans Hypothetical
protein C44C10.1 protein.
Length = 300
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/32 (34%), Positives = 13/32 (40%)
Frame = +2
Query: 83 PGSPSGSSNQLRRQHRGKESVCDRCPRYXRSP 178
PG P G+ N G CD CP +P
Sbjct: 267 PGQPGGNGNNGADGETGAPGGCDHCPPPRTAP 298
>U58753-1|AAC24437.2| 814|Caenorhabditis elegans Hypothetical
protein W03B1.2 protein.
Length = 814
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 193 AGSLFRRPXIPWTAITYRFFAPVLSAQLITA 101
A LFR +P+ TY F +L L+TA
Sbjct: 562 ASCLFRSTIMPFVVFTYIFVTGILLVNLLTA 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,592
Number of Sequences: 27780
Number of extensions: 216468
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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