Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l10
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    29   0.73 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   1.3  
SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces po...    27   2.2  
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    26   5.1  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    26   5.1  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    25   9.0  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +2

Query: 164 KENSCVSGLPNGYSVAVNKSILLNNKMFKLWTLVRDNKLMTAE 292
           KEN+C +  P  +S     +  +NN+  +L  L R N L+  E
Sbjct: 474 KENNCKNQYPQYFSNIDESNAFINNQCLELEALNRKNDLIRGE 516


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 113  LIVSLTNLKNAMPVFEYK--ENSCVSGLPNGYSVAVNKSILLNNKMFKLWTLVRDNKLMT 286
            ++ S+TNLK+   +  YK    + +  +    S   NK + L +K+  L   + +N    
Sbjct: 811  MVASVTNLKSGRDILRYKAVTANTLFSIYGFLSAFDNKKVTLPDKVVSLMIELLENLTAV 870

Query: 287  AEDPYIPHIA 316
             +   IP+I+
Sbjct: 871  NDPKLIPYIS 880


>SPAC12G12.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 412

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 414 VLFVNFTKHDCLGPTTSLPFN 352
           V F+ F  H+C+ P+   PFN
Sbjct: 131 VRFLRFASHNCVHPSDDAPFN 151


>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +2

Query: 122 SLTNLKNAMPVFEYKENSCVSGLPNGYSVAVNKSILLNNKMFKLWTLVRDNKLMTAEDPY 301
           ++TN+ +   V+EY +     GL N  S          N + K W  +  N  +T +  Y
Sbjct: 284 NMTNVWSGGIVYEYSQEVNDYGLVNVSSTGERVLTTDYNNLKKQWASISPN--ITYKHSY 341

Query: 302 IPHIALPIC 328
            P+  +P C
Sbjct: 342 NPNGTIPEC 350


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 508 AVVHPINFCVAHQHTGHVQHKSVV*RNVILVG 413
           A+   I   VAH H+  + H+ +   NVIL G
Sbjct: 615 AIFFQIALAVAHLHSFDIIHRDIKDENVILEG 646


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 286 GHEFIVSHQRPQFKHFIIEQNGL 218
           G +F++ H+RP F   I +QN L
Sbjct: 75  GIQFVIIHERPPFLWVIQKQNRL 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,002
Number of Sequences: 5004
Number of extensions: 54629
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)