Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l10
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499     30   1.3  
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    30   1.3  
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600           29   3.0  
07_03_0606 + 19912090-19913430                                         28   5.3  
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413     28   5.3  
07_03_0738 + 21093024-21093454,21093540-21093964,21094076-210942...    27   9.2  

>06_03_1195 + 28311450-28312294,28312418-28312966,28314319-28314499
          Length = 524

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 501 YTQLIFALLTSTPAMYSTSPSSSAT*FLSVLFVNFTKHDCLGPTTSLPFNLFTL 340
           +++L+F LL ST A+YS++ SSS++  L       T       TT+   N FTL
Sbjct: 71  FSRLLFFLLFSTTALYSSTSSSSSSAVLRATTTTTT----TTTTTTTTTNTFTL 120


>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 250 IVDVGARQ*THDRRRSVHSAHCAAHLFIQQQSEQVEGQACGRP 378
           ++D G R      R   HS +C + L + Q S  V+  AC  P
Sbjct: 404 VLDGGLRDKPGKNRDHYHSCYCLSGLSVSQYSAMVDSDACPLP 446


>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
          Length = 251

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 222 PFCSIIKCLNCGRWCETINS*PPKIRTFRTLRCP 323
           P+C    CL CG  C+ + S  P IR  R  RCP
Sbjct: 23  PWCQRPLCL-CGDRCQLMASRNPDIRGRRFFRCP 55


>07_03_0606 + 19912090-19913430
          Length = 446

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 437 DDGLVLYMAGVLVSNAKINWVYDGRRY 517
           D G  L   G + +N  + WVY+ RRY
Sbjct: 249 DTGCWLLNEGTMQANGSLYWVYEDRRY 275


>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
          Length = 677

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = +2

Query: 65  YYCNFIHLFHTTPVPKLIVSLTNLKNAMP-VFEYKENSCVSGLPNGYSVAVNKSILLNNK 241
           Y C   H+ HT   PKL     +L   M  + E  +  C        S  +N  +L +N+
Sbjct: 171 YPCKASHIEHTMKTPKLKFDRVDLSTRMKHIVEQLKPVCAK-----VSTILNLELLESNR 225

Query: 242 MFKLWTLVRDNKLMTAEDPYIP 307
              L +L      M  + P++P
Sbjct: 226 NIGLMSLNAALSRMPGQAPFLP 247


>07_03_0738 +
           21093024-21093454,21093540-21093964,21094076-21094201,
           21094277-21094398,21094496-21094706,21095038-21095275,
           21095351-21095498,21095640-21095975
          Length = 678

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
 Frame = -1

Query: 218 CSPPQSSRLVNPIRNYFLCTQTRAWH--SLDWLGTQSIWVRAWYEI 87
           C P  +        N FL    + +   SL W+G  S+W R  Y +
Sbjct: 209 CVPDLTQEQCKECLNTFLFQAKQVYFGKSLSWVGMNSVWCRLMYSV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,314
Number of Sequences: 37544
Number of extensions: 347157
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)