Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l07
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    28   1.4  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.4  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    27   3.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   4.3  
SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase Cgs2|Schi...    26   4.3  
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.6  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    25   7.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.9  
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    25   9.9  

>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 537 EIIFHKQKSKRDLNSLGALFATKQGLLKILMRLNFDNKSN 656
           ++ FH Q+ KRD+ +L  ++ T    L  L+   F + +N
Sbjct: 79  QLEFHAQEGKRDVTNLTCVYGTSPQQLDRLITREFSSDAN 118


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)
 Frame = +1

Query: 64  SNLDALTLQYWPDVDRDIFCNVNKQIRAPYS----------YNYKGTKFSRCITKELLDK 213
           S ++   LQ WPDV   +F +   ++  P S          ++Y+GTK    +    L K
Sbjct: 267 SRINQAVLQKWPDVSLYVFGSFETKLYLPTSDLDLVIISPEHHYRGTKKDMFVLAHHLKK 326

Query: 214 LK 219
           LK
Sbjct: 327 LK 328


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 486 RAQFQDLCKNLLHCRIL 436
           RA+F +LC N+LH R L
Sbjct: 396 RAKFNNLCSNILHFRAL 412


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 77  ASKFESCICGMYKRTASLTQCAKL 6
           +S  E+C+  MYK + S+ QC  L
Sbjct: 621 SSLLEACMGNMYKNSGSVFQCGSL 644


>SPCC285.09c |cgs2|pde1|cAMP-specific phosphodiesterase
           Cgs2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 346

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 336 HINVQQWSHIVKWDSFKCNTHSF 404
           H++V  WS I K+D++     S+
Sbjct: 74  HLSVDSWSSITKYDNYTVENESY 96


>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 215

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = -1

Query: 597 RTMRPTS*DRVWISACEK*FRLN--GKLDR---CPNCNQVCRRAQFQDLCKNL 454
           RT +P   D +W +AC++   +N   K  R    P C Q+C  +Q  D   NL
Sbjct: 81  RTCQPKQHDSIWCTACQQTKGINEFSKAQRHVLDPRC-QICVHSQRNDGDDNL 132


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = -2

Query: 155 LYGARICLLTLQKISLSTSGQYCNVSASKFESCI 54
           +Y  R CL+    + L    QYC     + ESC+
Sbjct: 82  IYNKR-CLMAYHNLRLQRLRQYCWSGGKRMESCL 114


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/65 (23%), Positives = 27/65 (41%)
 Frame = +1

Query: 7   SFAHCVREAVRLYIPHMQDSNLDALTLQYWPDVDRDIFCNVNKQIRAPYSYNYKGTKFSR 186
           +F     +  R     + D  L+ L+  Y    D  I  +V  ++R  ++  +KG    R
Sbjct: 390 AFLETANQEQRFLSTEVYDCLLNFLSFVYTDSSDPQIKDHVRDRLRTIFTRYFKGEFVLR 449

Query: 187 CITKE 201
           C T +
Sbjct: 450 CSTSD 454


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/85 (21%), Positives = 37/85 (43%)
 Frame = +3

Query: 405 KYRYVHNDTNAKFYNVIDFCKGLEIAHDDILDCNWDSDQVYHLNEIIFHKQKSKRDLNSL 584
           K   +  +T     + +D  KGL+  +D       +    YH+N  +F+ +      +++
Sbjct: 423 KVNALPEETTLAVNHRVDASKGLKQVYDRYGGLLEEFGHEYHVNVTLFNGETVVEYEDAI 482

Query: 585 GALFATKQGLLKILMRLNFDNKSNA 659
           G +FA+    L+      +D  S+A
Sbjct: 483 GHIFASTAKTLEPSPVSPYDESSDA 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,183
Number of Sequences: 5004
Number of extensions: 48405
Number of successful extensions: 156
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)