Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l04
         (685 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0261 + 1926458-1926523,1926959-1927144                           29   3.4  
04_04_0839 - 28565732-28565908,28566380-28566544,28566656-285667...    28   6.0  
02_05_0285 - 27498946-27499122,27499944-27500108,27500828-275009...    28   6.0  

>06_01_0261 + 1926458-1926523,1926959-1927144
          Length = 83

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 242 SRLFQLVLPEYXXXXXXXXXXXXSGEWFSLLINIPLILYH 361
           SR+ ++V+PE+            SG W   L++ P++ Y+
Sbjct: 41  SRINKVVIPEFVLQAALSVLFLLSGHWAMFLLSAPMVYYN 80


>04_04_0839 -
           28565732-28565908,28566380-28566544,28566656-28566788,
           28566888-28567007,28568361-28568740
          Length = 324

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 216 LCIFELPSFHVCFSWFCRNIYCICSLMYCSCCP 314
           LCI  L +F V F  FC  + CI  +  C C P
Sbjct: 168 LCIVFL-AFDVFFVVFCVALACIIGIAVCCCLP 199


>02_05_0285 -
           27498946-27499122,27499944-27500108,27500828-27500960,
           27501052-27501171,27502436-27502980
          Length = 379

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 216 LCIFELPSFHVCFSWFCRNIYCICSLMYCSCCP 314
           LCI  L +F V F  FC  + CI  +  C C P
Sbjct: 223 LCIVFL-AFDVFFVVFCVALACIIGIAVCCCLP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,765,212
Number of Sequences: 37544
Number of extensions: 296652
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)