Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l04
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical pr...    81   7e-16
AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical ...    41   0.001
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine re...    31   1.0  
AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine re...    29   3.1  
AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine re...    29   3.1  
U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific ...    27   9.4  
U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine rec...    27   9.4  

>Z78065-2|CAB01516.2|  145|Caenorhabditis elegans Hypothetical
           protein T09E8.3 protein.
          Length = 145

 Score = 81.0 bits (191), Expect = 7e-16
 Identities = 40/97 (41%), Positives = 51/97 (52%)
 Frame = +2

Query: 248 LFQLVLPEYXXXXXXXXXXXXSGEWFSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIM 427
           L QL+LPEY            S +  S+L N+PL  YHI+ Y  RPVMSGPG+YDPT+I+
Sbjct: 48  LNQLILPEYIIHGTFTVLFIFSWQLISILANLPLAFYHIYTYAKRPVMSGPGIYDPTTIL 107

Query: 428 NADVLTSCQREGWIKXXXXXXXXXXXXXGMIVVLIAA 538
           N   L+S  R  WIK              MI  L+ +
Sbjct: 108 NRSTLSSTLRISWIKLAFYLVSFFYYLYAMIYTLVTS 144



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/53 (60%), Positives = 41/53 (77%)
 Frame = +1

Query: 43  MAFSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSL 201
           MAF+F AF Y++ALI   F IFF+I+ VI  DEL+TDYKNPI+QC +LN + L
Sbjct: 1   MAFTFAAFCYLLALIAVGFCIFFAIYTVICVDELRTDYKNPIEQCRNLNQLIL 53


>AC006812-2|AAK39349.1|   56|Caenorhabditis elegans Hypothetical
           protein Y64H9A.1 protein.
          Length = 56

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = +2

Query: 386 VMSGPGLYDPTSIMNADVLTSCQREGWIK 472
           +M GPG+YDPT+I+N   L+S  R  WIK
Sbjct: 1   MMPGPGIYDPTTILNRSTLSSTLRISWIK 29


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +1

Query: 4   FISCSKVHCKTLKMAFSFPAFAYIVALITDAFL-IFFS--IFHVIAFDELKTDYKN 162
           + SC   + K+   + + P F+    + T+ FL + FS  + H   F ++ T YKN
Sbjct: 427 YYSCLSKYTKSATRSLNIPLFSLFAIIYTELFLFLSFSKWVLHFQLFSDIHTRYKN 482


>Z93380-4|CAB07597.1|  339|Caenorhabditis elegans Hypothetical
           protein F28C12.5 protein.
          Length = 339

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 186 ESCKFIYNLSLCIFELPSFHVCFSWFCRNIYCICSLMY 299
           E C  +Y  S C+FEL S+++   +F  + Y +CSL +
Sbjct: 98  EPCNLLYRSSDCVFELHSYYLT-GYF--STYSVCSLAF 132


>AF025454-8|AAK68370.1|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein62 protein.
          Length = 334

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/92 (21%), Positives = 39/92 (42%)
 Frame = +1

Query: 73  IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 252
           I++L+ D+F I+  +F     D  +    N    C + + +  F   +     YP  +  
Sbjct: 21  IISLLFDSFSIYLILFKSSKIDNFRYFLLNFQLTCTATDIILTFF--MQPVPLYPLVSGY 78

Query: 253 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSF 348
            +GF   F A  H C  + +  +++ I+   F
Sbjct: 79  ILGFLAQFGASTHFCLTMVIATIIYQIESMVF 110


>AF025454-9|AAK68371.1|  331|Caenorhabditis elegans Serpentine
           receptor, class i protein61 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 23/103 (22%), Positives = 41/103 (39%)
 Frame = +1

Query: 73  IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 252
           +++L+ D+F I+  +F     D  +    N    C   +    F+T       YP     
Sbjct: 21  VISLLFDSFSIYLILFRSEKIDNFRYFLLNFQLACTVTDIHLTFLTQAIPL--YPLVAGY 78

Query: 253 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSFNTIPHTQILHK 381
           ++GF   F    H C  L V  +++ I+   F  +   Q + K
Sbjct: 79  TMGFLSQFGVTPHVCMTLLVACLIYQIECMIFCFVRKHQTIAK 121


>AF024501-2|AAB70367.2|  334|Caenorhabditis elegans Serpentine
           receptor, class i protein63 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/103 (23%), Positives = 44/103 (42%)
 Frame = +1

Query: 73  IVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFIT*VYVFLNYPHFTSV 252
           +++LI D+F I+  +F     D  +    N    C +L  + L      V L YP  +  
Sbjct: 21  VISLIFDSFSIYLILFKSSKIDNFRYFLLNFQLAC-TLTDIHLTFFMQPVPL-YPLVSGY 78

Query: 253 SVGFAGIFTAFAH*CTVLAVRRMVFVIDQHSFNTIPHTQILHK 381
           ++GF  +F    H C    +  +++ I+   F  +   Q + K
Sbjct: 79  TLGFLSMFGVTTHFCMTALMACLIYQIESMVFCFVRKHQTIAK 121


>U97592-7|AAB52874.2|  332|Caenorhabditis elegans Sperm-specific
           family, class rprotein 2 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +1

Query: 49  FSFPAFAYIVALITDAFLIFFSIFHVIAFDELKTDYKNPIDQCNSLNPVSLFI 207
           F+FP    +      AFL+ FS+  V +F E+   ++    + + LN + + +
Sbjct: 74  FNFPDMRRLSIASASAFLLVFSVDDVTSFKEMSDIWQEICSRRSDLNELPIVV 126


>U80839-17|AAB37921.1|  372|Caenorhabditis elegans Serpentine
           receptor, class w protein97 protein.
          Length = 372

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 52  SFPAFAYIVALITDAFLIFFSIFHVIAFD-ELKTDYKNPIDQCNSLN 189
           S P F ++V      F  FFS+ +   +D  LK D   P D C  ++
Sbjct: 156 SKPRFGFLVIFWCFLFSAFFSLVYYFRYDFVLKKDPWQPKDHCTDVD 202


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,684,069
Number of Sequences: 27780
Number of extensions: 297450
Number of successful extensions: 683
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)