Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25l04
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   8.3  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   8.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.3  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 157 KNPIDQCNSLNPVSLFIT*VYVF 225
           +NPID C   + VS+  + V  F
Sbjct: 411 ENPIDTCEMFDSVSILFSDVVTF 433


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 186 ESCKFIYNLSLCIFE 230
           ++C  IYNL+ C+ E
Sbjct: 121 DNCNKIYNLAKCVQE 135


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 186 ESCKFIYNLSLCIFE 230
           ++C  IYNL+ C+ E
Sbjct: 121 DNCNKIYNLAKCVQE 135


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 323 FSLLINIPLILYHIHRYYTRPVMSGPGLYDPTSIMNADVLTS 448
           FS  I + LI+Y+  +  +  V     L +    MN D L S
Sbjct: 218 FSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRS 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,547
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)