Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k22
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.70 
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    28   1.2  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    27   1.6  
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   3.7  
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    25   6.5  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   6.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    25   6.5  
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc...    25   8.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.6  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    25   8.6  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    25   8.6  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 20/79 (25%), Positives = 32/79 (40%)
 Frame = +2

Query: 329  IKDSTTPLYNIAMYKSDYDAIKNKNIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKRSA 508
            IKD +   + I   ++  + + N +  T FD+ ND   +  + T  T P     P K S 
Sbjct: 860  IKDISNQTHEINSVENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSL 919

Query: 509  EDDLLPTRSNKRANRPEIS 565
                 P   N  AN   ++
Sbjct: 920  NTFSHPDSVNIVANDTSVA 938


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
 Frame = +2

Query: 272 LVQPESDAVRRIVIKMTQEIKDSTTPLYNIAMYKSDYDAIKNKNIKTLFDLYNDRLPINF 451
           L  PE D       ++ QE K +   L   ++Y+   D I +   +  F+     +P+ +
Sbjct: 59  LEHPEEDGEESDE-ELFQEEKFTLCTLKKGSVYQQPIDIIFSPGEEVFFERVGGDIPV-Y 116

Query: 452 LDTSATSPAVRKTPGKRSAEDDLL---PTRSNKRANRPEISVISSEDEQEDD 598
           L  +     + +       E+D L      S+      +ISV SSE+E+E++
Sbjct: 117 LSGTCIITNIPEEEDSSDLENDFLYGADEFSSDEEEMDDISVTSSEEEEEEN 168


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 341 TTPLYNIAMYKSDYDAIKNK-NIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKR 502
           TTP++NI     DYDA +N  N  T      ++ P+     +A       T G R
Sbjct: 218 TTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEGLR 272


>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 19/71 (26%), Positives = 36/71 (50%)
 Frame = +2

Query: 116 SDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDA 295
           SD DA + Q    +E   M + ++ + ++   +R + + L+   EALRN+ E +  +S  
Sbjct: 2   SDQDALDTQ---EKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVY 58

Query: 296 VRRIVIKMTQE 328
           V  +   +T E
Sbjct: 59  VGNVDYSVTPE 69


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 LNSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNV 214
           LNS+ DAG F  F N+ D    K +    +   N+
Sbjct: 528 LNSEIDAGYFDDFTNENDMSKYKEVHEKQAAIANM 562


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 176 KNLSNLASKFFNVRCVADTLEVMLEALRNNIEL 274
           K LSN+ +K FN++   + LE +  ++  ++ L
Sbjct: 221 KFLSNVKTKVFNMKASTEILESLFTSIEESLSL 253


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/72 (22%), Positives = 35/72 (48%)
 Frame = -3

Query: 516 SSSADLLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMAS*SLLYMAMLYSGVVE 337
           +S  DL   + +  G+   +   +   + LY   +    +   A  +LL ++ L+SG  +
Sbjct: 584 ASLRDLNDSISKLDGICMFIVAVITLFIFLYLIARNFSGVLTSAGTTLLGLSWLFSGSAQ 643

Query: 336 SLISCVIFMTIR 301
            L+S +IF+ ++
Sbjct: 644 ELLSSIIFVFVK 655


>SPAC926.05c |||diphthamide biosynthesis protein Dph4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 71  ITTIDQLKKFRDYLNSDADAGEFQIFLNQE 160
           + TIDQ+K+    L+S+ D  ++QI   +E
Sbjct: 43  VYTIDQVKEAYQVLSSEKDRQQYQIKQEEE 72


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 315 FMTIRRTASLSGCTNSILLRRASNITSNVSATQRTLKNFDAKFDKFFSITQSSWFKN 145
           +  I  T++ S  +   L + A N+   VS  +R    F  ++  FF     S F N
Sbjct: 304 YSIINLTSNHSSFSLKALKKIAHNLLPPVSVAERYANEFFLRYQSFFYFYPPSVFSN 360


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 482 RKTPGKRSAEDDLLPTRSNK 541
           R  P KR++ED ++P ++NK
Sbjct: 271 RPIPLKRASEDQIIPQQTNK 290


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +2

Query: 461 SATSPAVRKTPGKRSAEDDLLPTRSNKRANRPEISVISSEDEQEDD 598
           S T P +   P +++      P +S     +P   + S EDE +DD
Sbjct: 278 SPTKPVLLTAPRRKNKS----PKKSKPAVFKPVKPIFSDEDEDDDD 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,243,578
Number of Sequences: 5004
Number of extensions: 43912
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)