Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25k22
(605 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 38 0.006
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 38 0.006
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 38 0.006
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 38 0.006
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 33 0.12
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 33 0.12
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical... 33 0.16
U23411-2|AAC46731.2| 471|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81091-4|CAD56588.1| 287|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF067943-3|AAC17664.1| 266|Caenorhabditis elegans Hypothetical ... 27 7.9
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 37.9 bits (84), Expect = 0.006
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Frame = +2
Query: 23 LRLIE-KALATLTNRLHITTIDQLKKFRDYLNSDAD---AG--EFQIFLNQEDCVMLKNL 184
++L+E K A L H TTIDQ + L D + AG E + +N + ++ +
Sbjct: 959 MKLMEQKEEAMLVATKHATTIDQQTRRISVLEGDVEKLTAGIAERESSINALESNTMELI 1018
Query: 185 SNLASKFFNVRCVADTLEVMLE---ALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLY 355
S L + + + D L VML+ L+N E + + + R+ + + +++++ ++
Sbjct: 1019 SKLETTEAELEKLKDELAVMLKQNSELKNGKEGLSEKWNEERKKIQDLADQLREANKVVH 1078
Query: 356 NIAMYKSDYDAIKNKNIKTLFDLYND--RLPINFLDTSA 466
N+ M + + KN+ + + DL N +L I +D +A
Sbjct: 1079 NMRMKNVNLEEKKNELDQNVTDLTNKVRQLEIQLMDKAA 1117
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 37.9 bits (84), Expect = 0.006
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Frame = +2
Query: 23 LRLIE-KALATLTNRLHITTIDQLKKFRDYLNSDAD---AG--EFQIFLNQEDCVMLKNL 184
++L+E K A L H TTIDQ + L D + AG E + +N + ++ +
Sbjct: 959 MKLMEQKEEAMLVATKHATTIDQQTRRISVLEGDVEKLTAGIAERESSINALESNTMELI 1018
Query: 185 SNLASKFFNVRCVADTLEVMLE---ALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLY 355
S L + + + D L VML+ L+N E + + + R+ + + +++++ ++
Sbjct: 1019 SKLETTEAELEKLKDELAVMLKQNSELKNGKEGLSEKWNEERKKIQDLADQLREANKVVH 1078
Query: 356 NIAMYKSDYDAIKNKNIKTLFDLYND--RLPINFLDTSA 466
N+ M + + KN+ + + DL N +L I +D +A
Sbjct: 1079 NMRMKNVNLEEKKNELDQNVTDLTNKVRQLEIQLMDKAA 1117
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 37.9 bits (84), Expect = 0.006
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Frame = +2
Query: 23 LRLIE-KALATLTNRLHITTIDQLKKFRDYLNSDAD---AG--EFQIFLNQEDCVMLKNL 184
++L+E K A L H TTIDQ + L D + AG E + +N + ++ +
Sbjct: 719 MKLMEQKEEAMLVATKHATTIDQQTRRISVLEGDVEKLTAGIAERESSINALESNTMELI 778
Query: 185 SNLASKFFNVRCVADTLEVMLE---ALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLY 355
S L + + + D L VML+ L+N E + + + R+ + + +++++ ++
Sbjct: 779 SKLETTEAELEKLKDELAVMLKQNSELKNGKEGLSEKWNEERKKIQDLADQLREANKVVH 838
Query: 356 NIAMYKSDYDAIKNKNIKTLFDLYND--RLPINFLDTSA 466
N+ M + + KN+ + + DL N +L I +D +A
Sbjct: 839 NMRMKNVNLEEKKNELDQNVTDLTNKVRQLEIQLMDKAA 877
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 37.9 bits (84), Expect = 0.006
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 11/159 (6%)
Frame = +2
Query: 23 LRLIE-KALATLTNRLHITTIDQLKKFRDYLNSDAD---AG--EFQIFLNQEDCVMLKNL 184
++L+E K A L H TTIDQ + L D + AG E + +N + ++ +
Sbjct: 959 MKLMEQKEEAMLVATKHATTIDQQTRRISVLEGDVEKLTAGIAERESSINALESNTMELI 1018
Query: 185 SNLASKFFNVRCVADTLEVMLE---ALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLY 355
S L + + + D L VML+ L+N E + + + R+ + + +++++ ++
Sbjct: 1019 SKLETTEAELEKLKDELAVMLKQNSELKNGKEGLSEKWNEERKKIQDLADQLREANKVVH 1078
Query: 356 NIAMYKSDYDAIKNKNIKTLFDLYND--RLPINFLDTSA 466
N+ M + + KN+ + + DL N +L I +D +A
Sbjct: 1079 NMRMKNVNLEEKKNELDQNVTDLTNKVRQLEIQLMDKAA 1117
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 389 IKNKNIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKRSAEDDLLPTRSNKRAN-RPEIS 565
I N K + + +DR P + A+SP +PG S +D++ +++NK ++ P +
Sbjct: 678 INNTEKKIVIKVNSDRSPSR-TPSPASSPRASSSPGP-SRDDEVTSSQNNKESSPTPTVK 735
Query: 566 VISSEDEQEDDD 601
+ DE +D D
Sbjct: 736 SLVDYDESDDSD 747
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 389 IKNKNIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKRSAEDDLLPTRSNKRAN-RPEIS 565
I N K + + +DR P + A+SP +PG S +D++ +++NK ++ P +
Sbjct: 914 INNTEKKIVIKVNSDRSPSR-TPSPASSPRASSSPGP-SRDDEVTSSQNNKESSPTPTVK 971
Query: 566 VISSEDEQEDDD 601
+ DE +D D
Sbjct: 972 SLVDYDESDDSD 983
>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
protein Y110A7A.16 protein.
Length = 1250
Score = 33.1 bits (72), Expect = 0.16
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 146 FLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDAVRRIVIKMTQ 325
F++ E L+++ N+ + V C + + V+L+A R N+E +QP RR V+ T+
Sbjct: 626 FIDAESGKTLEDVRNVEAGCELVACDSQSANVILQAARGNLETIQP-----RRYVMAHTR 680
Query: 326 EIKD 337
++ D
Sbjct: 681 DLLD 684
>U23411-2|AAC46731.2| 471|Caenorhabditis elegans Hypothetical
protein T25E4.2 protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 400 FVFYGV-IIAFVHGNVVQRRGRIFNFLRHFYDYSPYGIAFR 281
F+FYG+ II F+ + R + F F H Y+Y G +R
Sbjct: 397 FIFYGIAIIVFILEIIFHRMTKNFTFFGHSYNYHLSGFEWR 437
>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
protein F56A8.1 protein.
Length = 1049
Score = 29.5 bits (63), Expect = 1.9
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 348 GVVESLISCVIFMTIRRTASLSGCTNSILLRRASNITSNVS-ATQRTLKNFDAKFDKFFS 172
G ++S+ S + + + G T ++ + +T S TQ + +FD K + FF+
Sbjct: 291 GFIDSISSAPLDWNHCKVVNFIGQTENVACGMRNGVTLFFSMVTQWFMSSFDTKMNAFFA 350
Query: 171 ITQSSW 154
+ S W
Sbjct: 351 VFMSIW 356
>Z75712-4|CAB00043.1| 694|Caenorhabditis elegans Hypothetical
protein K04G2.6 protein.
Length = 694
Score = 29.1 bits (62), Expect = 2.6
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = -2
Query: 385 VIIAFVHGNVVQRRGRIFNFLRHFYDYSPYGIAFRLHQL 269
V++ ++ +VV+ R + N++RH + P + +HQ+
Sbjct: 345 VLLKYIKYDVVETRVTVLNWIRHLHSSMPGQLFVHMHQI 383
>Z81091-4|CAD56588.1| 287|Caenorhabditis elegans Hypothetical
protein F55H12.5 protein.
Length = 287
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 11 RTVLLRLIEKALATLTNRLHITTIDQLKKFRDYLNSDADAGEFQ 142
R LL + +T + R TT+ KKF D++NS ++ F+
Sbjct: 10 RASLLAAVNNRASTRSTRKKKTTMLSPKKFCDFINSKTNSKSFE 53
>AF067943-3|AAC17664.1| 266|Caenorhabditis elegans Hypothetical
protein F59B1.4 protein.
Length = 266
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 409 FNVFVFYGVIIAFVHGNVVQRRGRIFNFLRHFY 311
F FV++ +I V +V R+G+IF+F Y
Sbjct: 89 FAGFVYFTFMILVVRLKIVARKGKIFDFSNRSY 121
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,500,802
Number of Sequences: 27780
Number of extensions: 251286
Number of successful extensions: 1132
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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