Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k22
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.4  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           21   9.4  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.4  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.4  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  LTNRLHITTIDQLKKFRDYLNSDADAGEF 139
           +   LH+      K F DY NS  + GE+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEY 228


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 53  LTNRLHITTIDQLKKFRDYLNSDADAGEF 139
           +   LH+      K F DY NS  + GE+
Sbjct: 200 VVKNLHLPRFTLEKFFTDYCNSKTNTGEY 228


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 502 SLAGSFANCWT 470
           S++G+  NCWT
Sbjct: 233 SISGTALNCWT 243


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 502 SLAGSFANCWT 470
           S++G+  NCWT
Sbjct: 104 SISGTALNCWT 114


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 422 LYNDRLPINFLDTSATSPAVRKTPGKR 502
           L N R P N L TS T P   +  G+R
Sbjct: 189 LKNPR-PCNVLATSLTEPYTLRNYGRR 214


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 502 SLAGSFANCWT 470
           S++G+  NCWT
Sbjct: 233 SISGTALNCWT 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,074
Number of Sequences: 438
Number of extensions: 3003
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)