Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25k18
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.42 
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   2.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   3.0  
SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyce...    25   3.9  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    25   3.9  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   5.2  
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb...    25   6.8  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   6.8  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    24   9.0  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 163 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 8
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 103 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 213
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 103 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 219
           ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 760 EIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPAC29B12.03 |spd1||ribonucleotide reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 124

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 151 PLKLAL-NDDITSEPQQFSEPVYKMPIDDMMVGYN 252
           P + A+ N +  + PQ F EP +  P D +M G N
Sbjct: 87  PFEQAIPNYNWANPPQDFEEPEWLKPFDVVMEGTN 121


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 111 WHVQIHVYNLFANRNLCNKSGLALMRR 31
           WHV  H+   F N  LC K+ +   ++
Sbjct: 263 WHVPCHMIYKFWNVKLCQKTSIETSKK 289


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +3

Query: 27  NCVSSKPNHFCCINF 71
           +C+  +P+ FCC++F
Sbjct: 168 DCIKKEPSLFCCLDF 182


>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 220

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 124 GNHEKVEYIPLKLALNDDITSEP 192
           G    +E+ P K+ + DD+T EP
Sbjct: 138 GRSYHLEFNPPKVPMKDDVTGEP 160


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 101 WTCHTIGWATTKRWNTSR*NWRSTMISPANRNNLASPFTK 220
           WTC T  +AT ++ +T +    +   + A  NNL    T+
Sbjct: 303 WTCATCSFATQRKKSTFQKENANVDANHATENNLEGQATQ 342


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 198 LLRFAGDIIVERQFQRDVFHLFV 130
           L+RFAG I+ E Q Q     LFV
Sbjct: 787 LVRFAGGILTEDQLQPGKVALFV 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,444,890
Number of Sequences: 5004
Number of extensions: 25542
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)